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README.Rmd

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### Extract the counts as a Seurat object
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This convert the H5 SingleCellExperiment to Seurat so it might take long time and occupy a lot of memory dependeing on how many cells you are requesting.
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This convert the H5 SingleCellExperiment to Seurat so it might take long time and occupy a lot of memory depending on how many cells you are requesting.
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```{r}

README.md

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@@ -69,18 +69,18 @@ get_metadata() |>
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dplyr::distinct(tissue, file_id)
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#> # Source: SQL [?? x 2]
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#> # Database: DuckDB 0.6.2-dev1166 [unknown@Linux 3.10.0-1160.81.1.el7.x86_64:R 4.2.0/:memory:]
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#> tissue file_id
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#> <chr> <chr>
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#> 1 epithelial cell of alveolus of lung (cell culture) 0e8f9ce4-46e5-434e-9ca0-e…
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#> 2 peripheral zone of prostate 0f017e66-9c70-4d29-9435-2…
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#> 3 transition zone of prostate 0f017e66-9c70-4d29-9435-2…
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#> 4 superior frontal gyrus 0fe32cca-d111-42b6-9b93-b…
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#> 5 fovea centralis 100c44ed-f754-4d45-8649-d…
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#> 6 blood 1042ba0a-98c5-4816-897d-e…
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#> 7 telencephalon 3fe53a40-38ff-4f25-b33b-e…
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#> 8 kidney 69b67eef-43fd-40ff-8fd3-e…
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#> 9 blood 6a044711-8df7-4f88-bad7-f…
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#> 10 heart left ventricle 6a579758-a4b4-4f64-be54-4…
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#> tissue file_id
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#> <chr> <chr>
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#> 1 cortex of kidney 2977b3fa-e4d6-4929-8540-ae12d33a3c53
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#> 2 entorhinal cortex 29d5d028-6f90-4943-91f7-fa3f93731de8
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#> 3 middle temporal gyrus 2a689fda-d335-4ac0-81b1-a356fdf939db
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#> 4 respiratory airway 2c2d5bea-8be7-4227-8a56-f2a85d57fa56
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#> 5 thymus 2ec94470-8171-4825-8346-34d77383438b
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#> 6 ileum 2f893c30-c91b-487b-b1f8-b386a4ef91a3
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#> 7 cortex of kidney 2fe625b6-8c85-4818-a9c5-1189303f6e2b
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#> 8 fimbria of uterine tube 3044b5dd-a499-456e-86d9-94769bc3b63e
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#> 9 ampulla of uterine tube 3044b5dd-a499-456e-86d9-94769bc3b63e
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#> 10 temporal cortex 4e4bbb2d-f341-4523-a5a0-5407d8b03e0e
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#> # … with more rows
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```
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### Extract the counts as a Seurat object
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This convert the H5 SingleCellExperiment to Seurat so it might take long
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time and occupy a lot of memory dependeing on how many cells you are
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time and occupy a lot of memory depending on how many cells you are
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requesting.
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``` r

vignettes/Introduction.Rmd

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### Extract the counts as a Seurat object
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This convert the H5 SingleCellExperiment to Seurat so it might take long time and occupy a lot of memory dependeing on how many cells you are requesting.
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This convert the H5 SingleCellExperiment to Seurat so it might take long time and occupy a lot of memory depending on how many cells you are requesting.
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```{r}

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