replace donttest with dontrun

Author: myushen

R/dev.R

@@ -135,7 +135,7 @@ update_unharmonised <- function(unharmonised_parquet_dir, ...){
 #' @keywords internal
 #' @return A character vector of the newly-created anndata files
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' hdf5_to_anndata(
 #'     "/vast/projects/cellxgene_curated/splitted_DB2_data_0.2.1",
 #'     "/vast/projects/cellxgene_curated/splitted_DB2_anndata_0.2.1"
@@ -194,7 +194,7 @@ hdf5_to_anndata <- function(input_directory, output_directory){
 # @return A character vector of the newly-created anndata files
 # @noRd
 # @examples
-# \donttest{
+# \dontrun{
 # h5seurat_to_anndata(
 #     "/vast/projects/cellxgene_curated/splitted_DB2_data_0.2.1",
 #     "/vast/projects/cellxgene_curated/splitted_DB2_anndata_0.2.1"

R/unharmonised.R

@@ -37,7 +37,7 @@ UNHARMONISED_URL <- single_line_str(
 #' @return A named list, where each name is a dataset file ID, and each value is
 #'   a "lazy data frame", ie a `tbl`.
 #' @examples
-#' \donttest{
+#' \dontrun{
 #' dataset <- "838ea006-2369-4e2c-b426-b2a744a2b02b"
 #' harmonised_meta <- get_metadata() |> 
 #'     dplyr::filter(file_id == dataset) |> dplyr::collect()