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DESCRIPTION

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Description: Provides access to a copy of the Human Cell Atlas, but with
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harmonised metadata. This allows for uniform querying across numerous
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datasets within the Atlas using common fields such as cell type, tissue
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type, and patient ethnicity. Usage involves first querying the metadata table
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for cells of interest, and then downloading the corresponding cells into a
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SingleCellExperiment object.
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type, and patient ethnicity. Usage involves first querying the metadata
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table for cells of interest, and then downloading the corresponding cells
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into a SingleCellExperiment object.
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License: GPL-3
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Depends:
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R (>= 4.2.0)
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knitr,
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testthat
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Biarch: true
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biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression, GeneExpression, Normalization, Clustering, QualityControl, Sequencing, Transcription, Transcriptomics
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biocViews:
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AssayDomain,
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Infrastructure,
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RNASeq,
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DifferentialExpression,
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GeneExpression,
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Normalization,
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Clustering,
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QualityControl,
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Sequencing,
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Transcription,
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Transcriptomics
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Encoding: UTF-8
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RoxygenNote: 7.2.3
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LazyDataCompression: xz

NAMESPACE

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S3method(as.sparse,DelayedMatrix)
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export(get_SingleCellExperiment)
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export(get_default_cache_dir)
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export(get_metadata)
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export(get_seurat)
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importFrom(BiocGenerics,cbind)

NEWS.md

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# HCAquery 0.1.0
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* Added a `NEWS.md` file to track changes to the package.

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