Merge pull request #108 from stemangiola/counts-0.2.1

Update counts version to 0.2.1

Author: stemangiola

R/counts.R

@@ -13,14 +13,14 @@ assay_map <- c(
     cpm = "cpm"
 )
 
-#' Base URL pointing to the count data
+#' Base URL pointing to the count data at the current version
 COUNTS_URL <- single_line_str(
-    "https://swift.rc.nectar.org.au/v1/
-    AUTH_06d6e008e3e642da99d806ba3ea629c5/harmonised-human-atlas"
+    "https://object-store.rc.nectar.org.au/v1/
+    AUTH_06d6e008e3e642da99d806ba3ea629c5/cellxgene-0.2.1-hdf5"
 )
 #' Current version of the counts. This will be incremented when a newer
 #' version is released
-COUNTS_VERSION <- "0.2"
+COUNTS_VERSION <- "0.2.1"
 
 #' Gets a SingleCellExperiment from curated metadata
 #'

tests/testthat/test-query.R

@@ -131,7 +131,7 @@ test_that("get_SingleCellExperiment() assigns the right cell ID to each cell", {
 
     # Load the SCE from cache directly
     assay_1 = CuratedAtlasQueryR:::get_default_cache_dir() |>
-        file.path("0.2/original", id) |>
+        file.path(CuratedAtlasQueryR:::COUNTS_VERSION, "original", id) |>
         HDF5Array::loadHDF5SummarizedExperiment() |>
         assay("X") |>
         as.matrix()