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R/query.R

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@@ -18,7 +18,7 @@ aside <- function(x, ...) {
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x
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}
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REMOTE_URL <- "https://swift.rc.nectar.org.au/v1/AUTH_06d6e008e3e642da99d806ba3ea629c5/harmonised-human-atlas"
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REMOTE_URL <- "https://object-store.rc.nectar.org.au/v1/AUTH_06d6e008e3e642da99d806ba3ea629c5/harmonised-human-atlas"
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#' Given a data frame of HCA metadata, returns a SingleCellExperiment object
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#' corresponding to the samples in that data frame
@@ -374,7 +374,7 @@ get_seurat <- function(...) {
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#' @importFrom cli cli_alert_info
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#' @importFrom utils untar
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get_metadata <- function(
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remote_url = "https://object-store.rc.nectar.org.au/v1/AUTH_06d6e008e3e642da99d806ba3ea629c5/metadata-sqlite/metadata.parquet",
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remote_url = "https://object-store.rc.nectar.org.au/v1/AUTH_06d6e008e3e642da99d806ba3ea629c5/metadata/metadata.0.2.2.parquet",
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cache_directory = get_default_cache_dir()
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) {
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db_path <- file.path(cache_directory, "metadata.parquet")

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