Custom CNV filters not working and multiple samples behavior

[kat-leen]

Hello,

On the lollipop plot, the custom CNVs (classes CNV_amp and CNV_loss) are correctly displayed, but the filters do not seem to work on them. I cannot hide them using the legend, nor filter them by segment length (nothing happens).

In addition, when the data contains several samples with the same CNV start and stop positions, they are duplicated instead of being grouped as a list of samples (as it works for other mutation types).

Thank you for your help!