Another go that failed

Author: nabobalis

ndcube/ndcube.py

@@ -445,8 +445,7 @@ def quantity(self):
         """Unitful representation of the NDCube data."""
         return u.Quantity(self.data, self.unit, copy=_NUMPY_COPY_IF_NEEDED)
 
-
-    def _generate_independent_world_coords(self, pixel_corners, wcs, pixel_axes, units):
+    def _generate_independent_world_coords(self, pixel_corners, wcs, needed_axes, units):
         """
         Generate world coordinates for independent axes.
 
@@ -459,8 +458,8 @@ def _generate_independent_world_coords(self, pixel_corners, wcs, pixel_axes, uni
             If one needs pixel corners, otherwise pixel centers.
         wcs : astropy.wcs.WCS
             The WCS.
-        pixel_axes : array-like
-            The pixel axes.
+        needed_axes : array-like
+            The required pixel axes.
         units : bool
             If units are needed.
 
@@ -469,29 +468,19 @@ def _generate_independent_world_coords(self, pixel_corners, wcs, pixel_axes, uni
         array-like
             The world coordinates.
         """
-        naxes = len(self.data.shape)
-        pixel_indices = [np.array([0], dtype=int).reshape([1] * naxes).squeeze()] * naxes
-        for pixel_axis in pixel_axes:
-            len_axis = self.data.shape[::-1][pixel_axis]
-            # Define limits of desired pixel range based on whether corners or centers are desired
-            lims = (-0.5, len_axis + 1) if pixel_corners else (0, len_axis)
-            pix_ind = np.arange(lims[0], lims[1])
-            shape = [1] * naxes
-            shape[pixel_axis] = len(pix_ind)
-            pixel_indices[pixel_axis] = pix_ind.reshape(shape)
-        world_coords = wcs.pixel_to_world_values(*pixel_indices)
-        # TODO: Remove NaNs??? These should not be here
-        if np.isnan(world_coords).any():
-            if isinstance(world_coords, tuple| list):
-                world_coords = [world_coord[~np.isnan(world_coord)] for world_coord in world_coords]
-            else:
-                world_coords = world_coords[~np.isnan(world_coords)]
+        needed_axes = np.array(needed_axes).squeeze()
+        if self.data.ndim in needed_axes:
+            required_axes = needed_axes - 1
+        else:
+            required_axes = needed_axes
+        lims = (-0.5, self.data.shape[::-1][required_axes] + 1) if pixel_corners else (0, self.data.shape[::-1][required_axes])
+        indices = [np.arange(lims[0], lims[1]) if wanted else [0] for wanted in wcs.axis_correlation_matrix[required_axes]]
+        world_coords = wcs.pixel_to_world_values(*indices)
         if units:
-            mod = abs(wcs.world_n_dim - naxes) if wcs.world_n_dim > naxes else 0
-            world_coords = world_coords << u.Unit(wcs.world_axis_units[np.squeeze(pixel_axes)+mod])
+            world_coords = world_coords << u.Unit(wcs.world_axis_units[needed_axes])
         return world_coords
 
-    def _generate_dependent_world_coords(self, pixel_corners, wcs, pixel_axes, units):
+    def _generate_dependent_world_coords(self, pixel_corners, wcs, needed_axes, units):
         """
         Generate world coordinates for dependent axes.
 
@@ -504,8 +493,8 @@ def _generate_dependent_world_coords(self, pixel_corners, wcs, pixel_axes, units
             If one needs pixel corners, otherwise pixel centers.
         wcs : astropy.wcs.WCS
             The WCS.
-        pixel_axes : array-like
-            The pixel axes.
+        needed_axes : array-like
+            The required pixel axes.
         units : bool
             If units are needed.
 
@@ -520,13 +509,19 @@ def _generate_dependent_world_coords(self, pixel_corners, wcs, pixel_axes, units
             ranges = [np.arange(i) - 0.5 for i in pixel_shape]
         else:
             ranges = [np.arange(i) for i in pixel_shape]
+        # Limit the pixel dimensions to the ones present in the ExtraCoords
+        if isinstance(wcs, ExtraCoords):
+            ranges = [ranges[i] for i in wcs.mapping]
+            wcs = wcs.wcs
+            if wcs is None:
+                return []
         # This value of zero will be returned as a throwaway for unneeded axes, and a numerical value is
         # required so values_to_high_level_objects in the calling function doesn't crash or warn
         world_coords = [0] * wcs.world_n_dim
         for (pixel_axes_indices, world_axes_indices) in _split_matrix(wcs.axis_correlation_matrix):
-            if (pixel_axes is not None
-                    and len(pixel_axes)
-                    and not any(world_axis in pixel_axes for world_axis in world_axes_indices)):
+            if (needed_axes is not None
+                    and len(needed_axes)
+                    and not any(world_axis in needed_axes for world_axis in world_axes_indices)):
                 # needed_axes indicates which values in world_coords will be used by the calling
                 # function, so skip this iteration if we won't be producing any of those values
                 continue
@@ -556,7 +551,6 @@ def _generate_dependent_world_coords(self, pixel_corners, wcs, pixel_axes, units
                 world_coords[i] = coord << u.Unit(unit)
         return world_coords
 
-
     def _generate_world_coords(self, pixel_corners, wcs, *, needed_axes=None, units=None):
         """
         Private method to generate world coordinates.
@@ -579,32 +573,21 @@ def _generate_world_coords(self, pixel_corners, wcs, *, needed_axes=None, units=
         array-like
             The world coordinates.
         """
-        # TODO: Workout why I need this twice now.
         if isinstance(wcs, ExtraCoords):
             wcs = wcs.wcs
-            if not wcs:
-                return ()
-        if needed_axes is None or len(needed_axes) == 0:
-            needed_axes = np.array(list(range(wcs.world_n_dim)),dtype=int)
         axes_are_independent = []
         pixel_axes = set()
         for world_axis in needed_axes:
             pix_ax = world_axis_to_pixel_axes(world_axis, wcs.axis_correlation_matrix)
             axes_are_independent.append(len(pix_ax) == 1)
             pixel_axes = pixel_axes.union(set(pix_ax))
-        if len(pixel_axes) == 1:
-            pixel_axes = list(pixel_axes)
-        if all(axes_are_independent) and len(pixel_axes) == len(needed_axes):
-            world_coords = self._generate_independent_world_coords(pixel_corners, wcs, pixel_axes, units)
-        else:
-            world_coords = self._generate_dependent_world_coords(pixel_corners, wcs, pixel_axes, units)
-        if len(world_coords) > 1 and isinstance(world_coords, tuple | list):
-            world_coords = [np.squeeze(world_coord) for world_coord in world_coords]
+        pixel_axes = list(pixel_axes)
+        if all(axes_are_independent) and len(pixel_axes) == len(needed_axes) and len(needed_axes) != 0:
+            world_coords = self._generate_independent_world_coords(pixel_corners, wcs, needed_axes, units)
         else:
-            world_coords = np.squeeze(world_coords)
+            world_coords = self._generate_dependent_world_coords(pixel_corners, wcs, needed_axes, units)
         return world_coords
 
-
     @utils.cube.sanitize_wcs
     def axis_world_coords(self, *axes, pixel_corners=False, wcs=None):
         # Docstring in NDCubeABC.
@@ -628,8 +611,6 @@ def axis_world_coords(self, *axes, pixel_corners=False, wcs=None):
             [world_index_to_object_index[world_index] for world_index in world_indices]
         )
         axes_coords = self._generate_world_coords(pixel_corners, orig_wcs, needed_axes=world_indices, units=False)
-        if not isinstance(axes_coords, list):
-            axes_coords = [axes_coords]
         axes_coords = values_to_high_level_objects(*axes_coords, low_level_wcs=wcs)
         if not axes:
             return tuple(axes_coords)
@@ -662,8 +643,7 @@ def axis_world_coords_values(self, *axes, pixel_corners=False, wcs=None):
             identifier = identifier.replace("-", "__")
             identifiers.append(identifier)
         CoordValues = namedtuple("CoordValues", identifiers)
-        flag = len(axes_coords) == 1 or isinstance(axes_coords, tuple | list)
-        return CoordValues(*axes_coords[::-1]) if flag else CoordValues(axes_coords)
+        return CoordValues(*axes_coords[::-1])
 
     def crop(self, *points, wcs=None, keepdims=False):
         # The docstring is defined in NDCubeABC

ndcube/tests/test_ndcube.py

@@ -178,9 +178,14 @@ def test_axis_world_coords_wave_ec(ndcube_3d_l_ln_lt_ectime):
 
     coords = cube.axis_world_coords()
     assert len(coords) == 2
+    assert isinstance(coords[0], SkyCoord)
+    assert isinstance(coords[1], SpectralCoord)
 
     coords = cube.axis_world_coords(wcs=cube.combined_wcs)
     assert len(coords) == 3
+    assert isinstance(coords[0], SkyCoord)
+    assert isinstance(coords[1], SpectralCoord)
+    assert isinstance(coords[2], Time)
 
     coords = cube.axis_world_coords(wcs=cube.extra_coords)
     assert len(coords) == 1
@@ -200,8 +205,6 @@ def test_axis_world_coords_empty_ec(ndcube_3d_l_ln_lt_ectime):
     # slice the cube so extra_coords is empty, and then try and run axis_world_coords
     awc = sub_cube.axis_world_coords(wcs=sub_cube.extra_coords)
     assert awc == ()
-    sub_cube._generate_world_coords(pixel_corners=False, wcs=sub_cube.extra_coords, units=True)
-    assert awc == ()
 
 
 @pytest.mark.xfail(reason=">1D Tables not supported")