chore: dep updates and misc refactorings

Author: sureshg

backend/data/src/main/kotlin/dev/suresh/App.kt renamed to backend/data/src/main/kotlin/dev/suresh/DataApp.kt

@@ -108,7 +108,7 @@ fun KotlinMultiplatformExtension.jvmTarget(project: Project) =
             executable {
               mainClass = libs.versions.app.mainclass
               applicationDefaultJvmArgs = jvmRunArgs
-              applicationDistribution.duplicatesStrategy = DuplicatesStrategy.WARN
+              applicationDistribution.duplicatesStrategy = DuplicatesStrategy.INCLUDE
             }
           }
         }

backend/security/src/main/kotlin/dev/suresh/App.kt renamed to backend/security/src/main/kotlin/dev/suresh/SecApp.kt

@@ -35,6 +35,14 @@ apply(plugin = "dev.suresh.plugin.depreports")
 // Load the build script from a file
 // apply(from = rootDir.resolve("project.plugin.gradle.kts"))
 
+configurations.configureEach {
+  resolutionStrategy {
+    // failOnNonReproducibleResolution()
+    // eachDependency { if (requested.name.contains("intellij-coverage")) {
+    // useVersion(libs.versions.intellij.coverage.get()) }}
+  }
+}
+
 java {
   withSourcesJar()
   withJavadocJar()
@@ -115,7 +123,7 @@ tasks {
           Attributes.Name.IMPLEMENTATION_VENDOR.toString() to project.group,
       )
     }
-    duplicatesStrategy = DuplicatesStrategy.WARN
+    duplicatesStrategy = DuplicatesStrategy.INCLUDE
   }
 
   processResources {
@@ -290,16 +298,3 @@ dependencies {
   testImplementation(libs.mockk)
   // testImplementation(libs.slf4j.simple)
 }
-
-allprojects {
-  configurations.configureEach {
-    resolutionStrategy {
-      // force()
-      eachDependency {
-        if (requested.name.contains("intellij-coverage")) {
-          // useVersion(libs.versions.intellij.coverage.get())
-        }
-      }
-    }
-  }
-}

gradle/build-logic/src/main/kotlin/common/Multiplatform.kt

@@ -127,7 +127,7 @@ tasks {
           Attributes.Name.IMPLEMENTATION_VENDOR.toString() to project.group,
       )
     }
-    duplicatesStrategy = DuplicatesStrategy.WARN
+    duplicatesStrategy = DuplicatesStrategy.INCLUDE
   }
 
   withType<ProcessResources>().configureEach {
@@ -152,19 +152,20 @@ tasks {
 
   pluginManager.withPlugin("com.gradleup.shadow") {
     // Register a shadowJar task for the default jvm target
-    val mainCompilation = kotlin.jvm().compilations.getByName("main")
     val shadowJvmJar by
         registering(ShadowJar::class) {
-          from(tasks.named("jvmJar"))
-          // from(mainCompilation.output.allOutputs) -> allOutputs == classes + resources
+          val main by kotlin.jvm().compilations
+          // allOutputs == classes + resources
+          from(main.output.allOutputs)
           val runtimeDepConfig =
-              project.configurations.getByName(mainCompilation.runtimeDependencyConfigurationName)
+              project.configurations.getByName(main.runtimeDependencyConfigurationName)
           configurations = listOf(runtimeDepConfig)
           archiveClassifier = "all"
           mergeServiceFiles()
           manifest {
             attributes[Attributes.Name.MAIN_CLASS.toString()] = libs.versions.app.mainclass
           }
+          duplicatesStrategy = DuplicatesStrategy.INCLUDE
         }
 
     val buildExecutable by

gradle/build-logic/src/main/kotlin/dev.suresh.plugin.kotlin.jvm.gradle.kts

@@ -6,7 +6,7 @@ kotlin-jvmtarget               = "21"
 kotlin-dsl-jvmtarget           = "21"
 kotlin-api-version             = "2.1"
 kotlin-lang-version            = "2.1"
-gradle                         = "8.13-rc-2"
+gradle                         = "8.13"
 java-vendor                    = "Oracle"
 java-jvmArguments              = "--enable-preview"
 java-addModules                = "jdk.incubator.vector"
@@ -42,7 +42,7 @@ kotlin-wrappers                = "2025.2.8"
 kotlin-redacted                = "1.12.1"
 kotlin-serviceloader           = "0.0.15"
 kotlinx-multik                 = "0.2.3"
-kotlinx-dataframe              = "0.16.0-dev-5786"
+kotlinx-dataframe              = "0.16.0-dev-5838"
 kotlinx-kandy                  = "0.8.0"
 kotlin-statistics              = "0.4.0-RC1"
 evas                           = "1.2.0"
@@ -55,7 +55,7 @@ snakeyaml-engine-kmp           = "3.1.1"
 konsist                        = "0.17.3"
 spring-boot                    = "3.4.2"
 spring-depmgmt                 = "1.1.7"
-ktor                           = "3.1.0"
+ktor                           = "3.1.1"
 ktor-cohort                    = "2.6.1"
 otel                           = "1.47.0"
 otel-instr                     = "2.13.1"
@@ -83,7 +83,7 @@ jsch                           = "0.2.23"
 pty4j                          = "0.13.2"
 junit                          = "5.12.0"
 koin                           = "4.1.0-Beta5"
-koin-annotations               = "2.0.0-RC4"
+koin-annotations               = "2.0.0"
 kotest                         = "6.0.0.M2"
 mockk                          = "1.13.16"
 mokkery                        = "2.7.0"
@@ -141,7 +141,7 @@ config4k                       = "0.7.0"
 shedlock                       = "6.3.0"
 sherlock                       = "1.0.3"
 sqids                          = "0.1.0"
-tsid                           = "2.1.3"
+tsid                           = "2.1.4"
 expiringmap                    = "0.5.10"
 otp                            = "2.1.0"
 password4j                     = "1.8.2"
@@ -156,7 +156,7 @@ async-profiler                 = "3.0"
 ap-loader-all                  = "3.0-9"
 openjdk-jmc                    = "9.0.0"
 airlift-aircompressor          = "2.0.2"
-airlift-security               = "305"
+airlift-security               = "309"
 directory-keystore             = "1.1.0"
 maven-mima                     = "3.0.0-alpha-3"
 maven-archeologist             = "0.0.10"
@@ -181,7 +181,7 @@ chicory                        = "1.1.0"
 weh-bindings                   = "0.3"
 log4k                          = "0.30.0"
 rwmutex                        = "1.0.0"
-bluesky-ozone                  = "0.3.1"
+bluesky-ozone                  = "0.3.2"
 
 # Compose
 jetbrains-compose              = "1.8.0-alpha03"
@@ -213,7 +213,7 @@ nmcp                           = "0.0.9"
 nexus-publish                  = "2.0.0"
 vanniktech-publish             = "0.30.0"
 gradle-publish                 = "1.3.0"
-shadow                         = "9.0.0-beta8"
+shadow                         = "9.0.0-beta9"
 spotless                       = "7.0.2"
 semver-plugin                  = "0.8.0"
 vercraft                       = "0.5.0"
@@ -227,12 +227,12 @@ graalvm-nativeimage            = "0.10.5"
 github-depgraph                = "0.1.0"
 github-changelog               = "2.2.0"
 wire-plugin                    = "5.3.0"
-buildkonfig                    = "0.16.0"
+buildkonfig                    = "0.17.0"
 gmazzo-buildconfig             = "3.1.0"
 cyclonedx-plugin               = "1.10.0"
 modulegraph                    = "0.12.0"
 cash-molecule                  = "1.4.3"
-npm-publish-plugin             = "3.5.2"
+npm-publish-plugin             = "3.5.3"
 exposed-plugin                 = "0.2.1"
 jib-plugin                     = "3.4.4"
 jib-nativeimage-extn           = "0.1.0"

gradle/build-logic/src/main/kotlin/dev.suresh.plugin.kotlin.mpp.gradle.kts

@@ -1,6 +1,6 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.13-rc-2-all.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.13-all.zip
 networkTimeout=10000
 validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME