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supplement.qmd
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120 lines (102 loc) · 5.94 KB
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---
format:
docx:
reference-doc: my_styles.docx
number-sections: true
title: "*Supplement* Managing the unmanageable: Understanding the competing effects of salinity and nutrient loading on estuarine water quality"
bibliography: refs.bib
csl: estuaries-and-coasts.csl
crossref:
fig-title: Fig.
author:
- Marcus W Beck:
email: mbeck@tbep.org
orcid: 0000-0002-4996-0059
institute: [TBEP]
correspondence: true
- Edward T Sherwood:
email: esherwood@tbep.org
orcid: 0000-0001-5330-302X
institute: [TBEP]
correspondence: false
- Rebecca R Murphy:
email: rmurphy@chesapeakebay.net
orcid: 0000-0003-3391-1823
institute: [CBP]
correspondence: false
- Kerry Flaherty-Walia:
email: kfwalia@tbep.org
orcid: 0000-0002-6032-0570
institute: [TBEP]
correspondence: false
- Qian Zhang:
email: qzhang@chesapeakebay.net
orcid: 0000-0003-0500-5655
institute: [CBP]
correspondence: false
- Blake A Simmons:
email: bsimmons@tbep.org
orcid: 0000-0002-1918-3463
institute: [TBEP]
correspondence: false
- Maya C Burke:
email: mburke@tbep.org
orcid: 0000-0002-3847-6501
institute: [TBEP]
correspondence: false
institute:
- TBEP: Tampa Bay Estuary Program, 263 13th Ave S., Suite 350, St. Petersburg, Florida 33701 USA
- CBP: University of Maryland Center for Environmental Science/U.S. Environmental Protection Agency Chesapeake Bay Program, 1750 Forest Drive, Annapolis, Maryland 21401 USA
filters:
- templates/scholarly-metadata.lua
- templates/author-info-blocks.lua
execute:
echo: false
warning: false
ft.keepnext: false
ft.align: left
---
```{r}
#| results: hide
library(knitr)
library(here)
library(flextable)
load(file = here('tabs/suppgamtab.RData'))
load(file = here('tabs/suppconcurvotbtab.RData'))
load(file = here('tabs/suppconcurvhbtab.RData'))
load(file = here('tabs/suppconcurvmtbtab.RData'))
load(file = here('tabs/suppconcurvltbtab.RData'))
```
## Figures {.unnumbered}
{#fig-suppnorm}
{{< pagebreak >}}
## Tables {.unnumbered}
```{r}
#| label: tbl-supgamtab
#| tbl-cap: "Generalized Additive Model (GAM) summary statistics for chlorophyll-a predictions by bay segment in Tampa Bay (n = 480 for each). Results are shown for models with different total nitrogen loading lags, whether salinity or loading were corrected for seasonality, and constraints on the number of smoothers (K) for time, loading, and salinity (flexible or fixed). Loads were evaluated as cumulative sums for the current month up to a three month lag. Results for the overall model fit are shown with the Generalized Cross-Validation (GCV) scores in the top rows and deviance explained (Dev. Expl.) in the bottom rows. OTB: Old Tampa Bay; HB: Hillsborough Bay; MTB: Middle Tampa Bay; LTB: Lower Tampa Bay."
suppgamtab
```
{{< pagebreak >}}
```{r}
#| label: tbl-supconcurvotbtab
#| tbl-cap: "Concurvity estimates for the __Old Tampa Bay__ Generalized Additive Models. Values range from 0 to 1 and assess the degree of multicollinearity among predictors. Results are shown for models with different total nitrogen loading lags, whether salinity or loading were corrected for seasonality, and constraints on the number of smoothers (K) for time, loading, and salinity (flexible or fixed). Loads were evaluated as cumulative sums for the current month up to a three month lag. Font size and shading are proportional among cells to emphasize differences."
suppconcurvotbtab
```
{{< pagebreak >}}
```{r}
#| label: tbl-supconcurvhbtab
#| tbl-cap: "Concurvity estimates for the __Hillsborough Bay__ Generalized Additive Models. Values range from 0 to 1 and assess the degree of multicollinearity among predictors. Results are shown for models with different total nitrogen loading lags, whether salinity or loading were corrected for seasonality, and constraints on the number of smoothers (K) for time, loading, and salinity (flexible or fixed). Loads were evaluated as cumulative sums for the current month up to a three month lag. Font size and shading are proportional among cells to emphasize differences."
suppconcurvhbtab
```
{{< pagebreak >}}
```{r}
#| label: tbl-supconcurvmtbtab
#| tbl-cap: "Concurvity estimates for the __Middle Tampa Bay__ Generalized Additive Models. Values range from 0 to 1 and assess the degree of multicollinearity among predictors. Results are shown for models with different total nitrogen loading lags, whether salinity or loading were corrected for seasonality, and constraints on the number of smoothers (K) for time, loading, and salinity (flexible or fixed). Loads were evaluated as cumulative sums for the current month up to a three month lag. Font size and shading are proportional among cells to emphasize differences."
suppconcurvmtbtab
```
{{< pagebreak >}}
```{r}
#| label: tbl-supconcurvltbtab
#| tbl-cap: "Concurvity estimates for the __Lower Tampa Bay__ Generalized Additive Models. Values range from 0 to 1 and assess the degree of multicollinearity among predictors. Results are shown for models with different total nitrogen loading lags, whether salinity or loading were corrected for seasonality, and constraints on the number of smoothers (K) for time, loading, and salinity (flexible or fixed). Loads were evaluated as cumulative sums for the current month up to a three month lag. Font size and shading are proportional among cells to emphasize differences."
suppconcurvltbtab
```