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khetherintcezard
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removed space
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convert_gvf_to_vcf/convertGVFtoVCF.py

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -679,8 +679,7 @@ def generate_vcf_metainformation(gvf_pragmas, gvf_non_essential, list_of_vcf_obj
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pragma_to_vcf_map = read_pragma_mapper(os.path.join(etc_folder, 'pragma_mapper.tsv'))
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for pragma in gvf_pragmas:
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vcf_header_key, pragma_name, pragma_value = get_pragma_name_and_value(pragma, " ", list_of_pragma, pragma_to_vcf_map)
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pragmas_to_add.append(
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generate_custom_unstructured_meta_line(vcf_header_key, pragma_value))
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pragmas_to_add.append(generate_custom_unstructured_meta_line(vcf_header_key, pragma_value))
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# adding in source
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for vcf_obj in list_of_vcf_objects:
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pragmas_to_add.append(generate_custom_unstructured_meta_line("source", vcf_obj.source))

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