Update tests

Author: Neves-P

DESCRIPTION

@@ -35,7 +35,7 @@ License: GPL (>= 3)
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.2
 URL: https://github.com/tece-lab/DAISIEutils, https://tece-lab.github.io/DAISIEutils/
 BugReports: https://github.com/tece-lab/DAISIEutils/issues
 Depends: R (>= 4.2.0)

man/DAISIEutils-package.Rd

@@ -156,9 +156,11 @@ test_that("setup_model is correct for rr_lac_di", {
     ),
     cs_version = list(
       model = 2,
+      function_to_optimize = "DAISIE",
       relaxed_par = "cladogenesis",
       par_sd = 0,
-      par_upper_bound = Inf
+      par_upper_bound = Inf,
+      integration_method = "standard"
     )
   )
   expect_equal(model_arguments, expected_arguments)
@@ -186,9 +188,11 @@ test_that("setup_model is correct for rr_lac_dd", {
     ),
     cs_version = list(
       model = 2,
+      function_to_optimize = "DAISIE",
       relaxed_par = "cladogenesis",
       par_sd = 0,
-      par_upper_bound = Inf
+      par_upper_bound = Inf,
+      integration_method = "standard"
     )
   )
   expect_equal(model_arguments, expected_arguments)
@@ -216,9 +220,11 @@ test_that("setup_model is correct for rr_mu_dd", {
     ),
     cs_version = list(
       model = 2,
+      function_to_optimize = "DAISIE",
       relaxed_par = "extinction",
       par_sd = 0,
-      par_upper_bound = Inf
+      par_upper_bound = Inf,
+      integration_method = "standard"
     )
   )
   expect_equal(model_arguments, expected_arguments)
@@ -245,9 +251,11 @@ test_that("setup_model is correct for rr_mu_di", {
     ),
     cs_version = list(
       model = 2,
+      function_to_optimize = "DAISIE",
       relaxed_par = "extinction",
       par_sd = 0,
-      par_upper_bound = Inf
+      par_upper_bound = Inf,
+      integration_method = "standard"
     )
   )
   expect_equal(model_arguments, expected_arguments)
@@ -275,9 +283,11 @@ test_that("setup_model is correct for rr_k", {
     ),
     cs_version = list(
       model = 2,
+      function_to_optimize = "DAISIE",
       relaxed_par = "carrying_capacity",
       par_sd = 0,
-      par_upper_bound = Inf
+      par_upper_bound = Inf,
+      integration_method = "standard"
     )
   )
   expect_equal(model_arguments, expected_arguments)
@@ -305,9 +315,11 @@ test_that("setup_model is correct for rr_laa_dd", {
     ),
     cs_version = list(
       model = 2,
+      function_to_optimize = "DAISIE",
       relaxed_par = "anagenesis",
       par_sd = 0,
-      par_upper_bound = Inf
+      par_upper_bound = Inf,
+      integration_method = "standard"
     )
   )
   expect_equal(model_arguments, expected_arguments)