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lines changed Original file line number Diff line number Diff line change 11# Testing BamToCov
22
3+ ## Testing scenarios
4+
5+ To create minimal examples a set of scripts is provided in
6+ ` scripts/benchmarking/ ` to generate artificial BAM files.
7+
8+ Some examples are provided in the repository (with screenshots):
9+
10+ * [ Target (1 chromosome, 3 features)] ( https://github.com/telatin/bamtocov/tree/main/input/tiny#readme )
11+ * [ 3 chromosomes, 1 feature each] ( https://github.com/telatin/bamtocov/tree/main/input/artificial#readme )
12+
313## Test suite
414
515The program default test suite can be invoked by:
@@ -16,7 +26,7 @@ make testall
1626
1727This runs both the default tests, plus a legacy Bash script
1828
19- ## Shpec tests
29+ ### Shpec tests
2030
2131The default test suite was written using the [ Shpec] ( https://github.com/rylnd/shpec )
2232framework, and can be individually run as:
@@ -50,7 +60,7 @@ Make test
506014 examples, 0 failures
5161```
5262
53- ## Legacy test suite
63+ ### Legacy test suite
5464
5565A minimal test suite is provided in ` tests/all.sh ` . The output will
5666show the passing and failing tests as well as a check on the versions
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