sty: run ruff format

Author: oesteban

templateflow/__init__.py

@@ -21,6 +21,7 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """TemplateFlow is the Zone of Templates."""
+
 from datetime import datetime as _dt
 from datetime import timezone as _tz
 
@@ -30,6 +31,7 @@
     from ._version import __version__
 except ModuleNotFoundError:
     from importlib.metadata import PackageNotFoundError, version
+
     try:
         __version__ = version(__packagename__)
     except PackageNotFoundError:

templateflow/_loader.py

@@ -24,6 +24,7 @@
 
 .. autoclass:: Loader
 """
+
 from __future__ import annotations
 
 import atexit

templateflow/api.py

@@ -21,6 +21,7 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """TemplateFlow's Python Client."""
+
 import sys
 from json import loads
 from pathlib import Path
@@ -35,9 +36,7 @@
     requires_layout,
 )
 
-_layout_dir = tuple(
-    item for item in dir(TF_LAYOUT) if item.startswith('get_')
-)
+_layout_dir = tuple(item for item in dir(TF_LAYOUT) if item.startswith('get_'))
 
 
 @requires_layout
@@ -92,10 +91,9 @@ def ls(template, **kwargs):
         kwargs['extension'] = _normalize_ext(kwargs['extension'])
 
     return [
-        Path(p) for p in TF_LAYOUT.get(
-            template=Query.ANY if template is None else template,
-            return_type='file',
-            **kwargs
+        Path(p)
+        for p in TF_LAYOUT.get(
+            template=Query.ANY if template is None else template, return_type='file', **kwargs
         )
     ]
 

templateflow/cli.py

@@ -21,6 +21,7 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """The TemplateFlow Python Client command-line interface (CLI)."""
+
 from __future__ import annotations
 
 import json
@@ -31,20 +32,20 @@
 
 from templateflow import __package__, api
 from templateflow._loader import Loader as _Loader
-from templateflow.conf import TF_HOME, TF_USE_DATALAD, TF_AUTOUPDATE
+from templateflow.conf import TF_AUTOUPDATE, TF_HOME, TF_USE_DATALAD
 
 load_data = _Loader(__package__)
 
 ENTITY_SHORTHANDS = {
     # 'template': ('--tpl', '-t'),
-    'resolution': ('--res', ),
-    'density': ('--den', ),
-    'atlas': ('-a', ),
-    'suffix': ('-s', ),
+    'resolution': ('--res',),
+    'density': ('--den',),
+    'atlas': ('-a',),
+    'suffix': ('-s',),
     'desc': ('-d', '--description'),
     'extension': ('--ext', '-x'),
-    'label': ('-l', ),
-    'segmentation': ('--seg', ),
+    'label': ('-l',),
+    'segmentation': ('--seg',),
 }
 ENTITY_EXCLUDE = {'template', 'description'}
 TEMPLATE_LIST = api.get_templates()
@@ -57,16 +58,12 @@ def _nulls(s):
 def entity_opts():
     """Attaches all entities as options to the command."""
 
-    entities = json.loads(
-        Path(load_data('conf/config.json')).read_text()
-    )['entities']
+    entities = json.loads(Path(load_data('conf/config.json')).read_text())['entities']
 
     args = [
-        (
-            f"--{e['name']}",
-            *ENTITY_SHORTHANDS.get(e['name'], ())
-        )
-        for e in entities if e['name'] not in ENTITY_EXCLUDE
+        (f"--{e['name']}", *ENTITY_SHORTHANDS.get(e['name'], ()))
+        for e in entities
+        if e['name'] not in ENTITY_EXCLUDE
     ]
 
     def decorator(f: FC) -> FC:
@@ -135,9 +132,7 @@ def update(local, overwrite):
 def ls(template, **kwargs):
     """List the assets corresponding to template and optional filters."""
     entities = {k: _nulls(v) for k, v in kwargs.items() if v != ''}
-    click.echo(
-        '\n'.join(f'{match}' for match in api.ls(template, **entities))
-    )
+    click.echo('\n'.join(f'{match}' for match in api.ls(template, **entities)))
 
 
 @main.command()
@@ -146,9 +141,7 @@ def ls(template, **kwargs):
 def get(template, **kwargs):
     """Fetch the assets corresponding to template and optional filters."""
     entities = {k: _nulls(v) for k, v in kwargs.items() if v != ''}
-    click.echo(
-        '\n'.join(f'{match}' for match in api.get(template, **entities))
-    )
+    click.echo('\n'.join(f'{match}' for match in api.get(template, **entities)))
 
 
 if __name__ == '__main__':

templateflow/conf/_s3.py

@@ -21,6 +21,7 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """Tooling to handle S3 downloads."""
+
 from pathlib import Path
 from tempfile import mkstemp
 
@@ -93,10 +94,7 @@ def _update_skeleton(skel_file, dest, overwrite=True, silent=False):
 
         if newfiles:
             if not silent:
-                print(
-                    'Updating TEMPLATEFLOW_HOME using S3. Adding:\n%s'
-                    % '\n'.join(newfiles)
-                )
+                print('Updating TEMPLATEFLOW_HOME using S3. Adding:\n%s' % '\n'.join(newfiles))
             for fl in newfiles:
                 localpath = dest / fl
                 if localpath.exists():

templateflow/conf/bids.py

@@ -21,6 +21,7 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """Extending pyBIDS for querying TemplateFlow."""
+
 from bids.layout import BIDSLayout, add_config_paths
 
 from templateflow.conf import load_data
@@ -34,7 +35,5 @@ def __repr__(self):
         s = """\
 TemplateFlow Layout
  - Home: {}
- - Templates: {}.""".format(
-            self.root, ', '.join(sorted(self.get_templates()))
-        )
+ - Templates: {}.""".format(self.root, ', '.join(sorted(self.get_templates())))
         return s

templateflow/tests/test_api.py

@@ -154,9 +154,7 @@ def assert_same(self, other):
 journal={Cerebral Cortex}
 }"""
 
-fslr_lbib = (
-    'https://github.com/Washington-University/HCPpipelines/tree/master/global/templates'
-)
+fslr_lbib = 'https://github.com/Washington-University/HCPpipelines/tree/master/global/templates'
 
 fsaverage_fbib = """\
 @article{Fischl_1999,
@@ -181,9 +179,7 @@ def assert_same(self, other):
         ('fsLR', fslr_urls, fslr_fbib, fslr_lbib),
         (
             'fsaverage',
-            [
-                'https://doi.org/10.1002/(sici)1097-0193(1999)8:4%3C272::aid-hbm10%3E3.0.co;2-4'
-            ],
+            ['https://doi.org/10.1002/(sici)1097-0193(1999)8:4%3C272::aid-hbm10%3E3.0.co;2-4'],
             fsaverage_fbib,
             None,
         ),

templateflow/tests/test_s3.py

@@ -21,9 +21,11 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """Check S3-type repo tooling."""
+
+from importlib import reload
 from pathlib import Path
+
 import requests
-from importlib import reload
 
 from templateflow import conf as tfc
 
@@ -46,7 +48,9 @@ def test_get_skel_file(tmp_path, monkeypatch):
     assert Path(new_skel).stat().st_size > 0
 
     latest_md5 = (
-        requests.get(tfc._s3.TF_SKEL_URL(release='master', ext='md5', allow_redirects=True), timeout=10)
+        requests.get(
+            tfc._s3.TF_SKEL_URL(release='master', ext='md5', allow_redirects=True), timeout=10
+        )
         .content.decode()
         .split()[0]
     )

templateflow/tests/test_version.py

@@ -21,6 +21,7 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """Test version retrieval."""
+
 import sys
 from importlib import reload
 from importlib.metadata import PackageNotFoundError