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chear.ttl
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1988 lines (829 loc) · 48.4 KB
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@prefix : <http://hadatac.org/ont/chear#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix sio: <http://sementicscience.org/resource/> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix oboe: <http://ecoinformatics.org/oboe/oboe.1.0/oboe./owl#> .
@prefix prov: <http://hadatac.org/ont/prov#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix hasco: <http://hadatac.org/ont/hasco#> .
@prefix vstoi: <http://hadatac.org/ont/vstoi#> .
@prefix hasneto: <http://hadatac.org/ont/hasneto#> .
@base <http://hadatac.org/ont/chear> .
<http://hadatac.org/ont/chear> rdf:type owl:Ontology ;
owl:versionIRI <http://hadatac.org/ont/chear/0.3/> ;
owl:imports <http://hadatac.org/ont/hasco/> ;
rdfs:comment """Children's health and wellbeing are influenced by interactions between environmental and genetic factors. NIEHS is establishing an infrastructure, the Children's Health Exposure Analysis Resource (CHEAR), to provide the extramural research community access to laboratory and data analyses that add or expand the inclusion of environmental exposures in children’s health research. The goal of CHEAR is to provide tools so researchers can assess the full range of environmental exposures which may affect children's health. We anticipate that CHEAR will be used by children's health researchers conducting epidemiological or clinical studies that currently have limited consideration of environmental exposures, or those who have collected exposure data but seek more extensive analyses.
Read more at: https://www.niehs.nih.gov/research/supported/exposure/chear/""" .
#################################################################
#
# Annotation properties
#
#################################################################
### http://hadatac.org/ont/vstoi#hasMeasuredCharacteristic
vstoi:hasMeasuredCharacteristic rdf:type owl:AnnotationProperty .
### http://hadatac.org/ont/vstoi#hasWebDocumentation
vstoi:hasWebDocumentation rdf:type owl:AnnotationProperty .
#################################################################
#
# Object Properties
#
#################################################################
### http://hadatac.org/ont/chear#race
:race rdf:type owl:ObjectProperty ;
rdfs:domain sio:SIO_000498 ;
### rdfs:range :notsure .
### http://hadatac.org/ont/chear#hasAttributeReference
:hasAttributeReference rdf:type owl:ObjectProperty ;
rdfs:domain vstoi:Dataset ;
rdfs:range :AttributeReference .
### http://hadatac.org/ont/chear#exposure
:exposure rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#symptom
:exposure rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#hasDataset
:hasDataset rdf:type owl:ObjectProperty ;
rdfs:domain hasco:Study ;
rdfs:range vstoi:Dataset .
### http://hadatac.org/ont/chear#hasPossibleValue
:hasPossibleValue rdf:type owl:ObjectProperty ;
rdfs:domain :AttributeReference ;
rdfs:range :PossibleValue .
### http://hadatac.org/ont/chear#mothersHeightInCM
:mothersHeightInCM rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#hasMeasurement> .
### http://hadatac.org/ont/chear#mothersPostPregnancyWeight
:mothersPostPregnancyWeight rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#hasMeasurement> .
### http://hadatac.org/ont/chear#mothersPrePregnancyWeight
:mothersPrePregnancyWeight rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#hasMeasurement> .
### http://hadatac.org/ont/chear#postNatalETSExposure
:postNatalETSExposure rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :exposure .
### http://hadatac.org/ont/chear#preNatalETSExposure
:preNatalETSExposure rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :exposure .
### http://hadatac.org/ont/chear#passiveSmoking
:passiveSmoking rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :exposure .
### http://hadatac.org/ont/chear#house
:house rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#bigHouse
:bigHouse rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :house .
### http://hadatac.org/ont/chear#smallHouse
:smallHouse rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :house .
### http://hadatac.org/ont/chear#legal
:legal rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#medicalIssue
:medicalIssue rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#neighbourhoodSafety
:neighbourhoodSafety rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#physicalActivity
:physicalActivity rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#prejudice
:prejudice rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#socioeconomicStatus
:socioeconomicStatus rdf:type owl:ObjectProperty .
### http://hadatac.org/ont/chear#educationLevel
:educationLevel rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :socioeconomicStatus .
### http://hadatac.org/ont/chear#income
:income rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :socioeconomicStatus .
### http://hadatac.org/ont/chear#highIncome
:highIncome rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :income .
### http://hadatac.org/ont/chear#lowIncome
:lowIncome rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :income .
### http://hadatac.org/ont/chear#mediumIncome
:mediumIncome rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :income .
### http://hadatac.org/ont/chear#respiratoryProblem
:repiratoryProblem rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :symptom .
### http://hadatac.org/ont/chear#chestTightness
:chestTightness rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :symptom .
### http://hadatac.org/ont/chear#cough
:cough rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :symptom .
### http://hadatac.org/ont/chear#dryCough
:dryCough rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :symptom .
### http://hadatac.org/ont/chear#nightCough
:nightCough rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :symptom .
### http://hadatac.org/ont/chear#dyspnea
:dyspnea rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :symptom .
### http://hadatac.org/ont/chear#wheezing
:wheezing rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :symptom .
#################################################################
#
# Data properties
#
#################################################################
### http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#hasCode
<http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#hasCode> rdfs:domain :PossibleValue .
### http://hadatac.org/ont/chear#c_Section_Priority
:c_Section_Priority rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#drugHistory
:drugHistory rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#ethnicityAndRaceSythesizedFromChartAndSurvey
:ethnicityAndRaceSythesizedFromChartAndSurvey rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#hasReference
:hasReference rdf:type owl:DatatypeProperty ;
rdfs:domain :AttributeReference ;
rdfs:range rdfs:Literal .
### http://hadatac.org/ont/chear#hasValue
:hasValue rdf:type owl:DatatypeProperty ;
rdfs:domain :PossibleValue ;
rdfs:range rdfs:Literal .
### http://hadatac.org/ont/chear#maritalStatus
:maritalStatus rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#mothersAgeInYears
:mothersAgeInYears rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#AgeInYears
:AgeInYears rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#mothersEducationBasedOnClinicalChart
:mothersEducationBasedOnClinicalChart rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#mothersOccupation
:mothersOccupation rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#newbornApgarScore
:newbornApgarScore rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#newbornBirthWeightInGrams
:newbornBirthWeightInGrams rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#gender
:gender rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#newbornGender
:newbornGender rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :gender ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#numberOfDaysAtTimeOfDelivery
:numberOfDaysAtTimeOfDelivery rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#numberOfSedentaryHours
:numberOfSedentaryHours rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#hasAppliance
:hasAppliance rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#hasAuthority
:hasAuthority rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#hasCareer
:hasCareer rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#numberOfTimesFemaleGaveBirth
:numberOfTimesFemaleGaveBirth rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#numberOfTimesFemaleGotPregnant
:numberOfTimesFemaleGotPregnant rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:integer .
### http://hadatac.org/ont/chear#pretermLessthan37weeks
:pretermLessthan37weeks rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#repeat_C_Section
:repeat_C_Section rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#routeOfDeliver
:routeOfDeliver rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
### http://hadatac.org/ont/chear#smokingStatus
:smokingStatus rdf:type owl:DatatypeProperty ;
rdfs:domain sio:SIO_000498 ;
rdfs:range xsd:string .
#################################################################
#
# Classes
#
#################################################################
### http://hadatac.org/ont/chear#AMA
:AMA rdf:type owl:Class ;
rdfs:subClassOf :AutoimmuneDiseaseBiomarker .
### http://hadatac.org/ont/chear#ANA
:ANA rdf:type owl:Class ;
rdfs:subClassOf :AutoimmuneDiseaseBiomarker .
### http://hadatac.org/ont/chear#ASMA
:ASMA rdf:type owl:Class ;
rdfs:subClassOf :AutoimmuneDiseaseBiomarker .
### http://hadatac.org/ont/chear#Adrenal_Corticotrophic_Hormone
:Adrenal_Corticotrophic_Hormone rdf:type owl:Class ;
rdfs:subClassOf :EndocrinologyBiomarker .
### http://hadatac.org/ont/chear#Alkaline_Phosphatase
:Alkaline_Phosphatase rdf:type owl:Class ;
rdfs:subClassOf :BoneDiseaseBiomarker .
### http://hadatac.org/ont/chear#Alpha_Foetoprotein
:Alpha_Foetoprotein rdf:type owl:Class ;
rdfs:subClassOf :EndocrinologyBiomarker .
### http://hadatac.org/ont/chear#Alpha_GST
:Alpha_GST rdf:type owl:Class ;
rdfs:subClassOf :NephrologyBiomarker .
### http://hadatac.org/ont/chear#Aminoterminal_Propeptide_Type_1_Collagen
:Aminoterminal_Propeptide_Type_1_Collagen rdf:type owl:Class ;
rdfs:subClassOf :BoneDiseaseBiomarker .
### http://hadatac.org/ont/chear#AnemiaBiomarker
:AnemiaBiomarker rdf:type owl:Class ;
rdfs:subClassOf :Biomarker .
### http://hadatac.org/ont/chear#Anti_HBc
:Anti_HBc rdf:type owl:Class ;
rdfs:subClassOf :InfectiousDiseaseBiomarker .
### http://hadatac.org/ont/chear#Anti_HBs
:Anti_HBs rdf:type owl:Class ;
rdfs:subClassOf :InfectiousDiseaseBiomarker .
### http://hadatac.org/ont/chear#Antimony
:Antimony rdf:type owl:Class ;
rdfs:subClassOf :MetalExposureBiomarker .
### http://hadatac.org/ont/chear#Apolipoprotein_AI
:Apolipoprotein_AI rdf:type owl:Class ;
rdfs:subClassOf :LipidMetabolismBiomarker .
### http://hadatac.org/ont/chear#Apolipoprotein_B48
:Apolipoprotein_B48 rdf:type owl:Class ;
rdfs:subClassOf :LipidMetabolismBiomarker .
### http://hadatac.org/ont/chear#Apolipoprotein_CII
:Apolipoprotein_CII rdf:type owl:Class ;
rdfs:subClassOf :LipidMetabolismBiomarker .
### http://hadatac.org/ont/chear#Apolipoprotein_E
:Apolipoprotein_E rdf:type owl:Class ;
rdfs:subClassOf :CardiacBiomarker ,
:LipidMetabolismBiomarker .
### http://hadatac.org/ont/chear#Arsenic
:Arsenic rdf:type owl:Class ;
rdfs:subClassOf :MetalExposureBiomarker .
### http://hadatac.org/ont/chear#Assay
:Assay rdf:type owl:Class ;
rdfs:subClassOf hasco:MethodActivity ;
rdfs:comment "used to determine the concentration of a chemical compound or chemical element" .
### http://hadatac.org/ont/chear#AttributeReference
:AttributeReference rdf:type owl:Class .
### http://hadatac.org/ont/chear#AutoimmuneDiseaseBiomarker
:AutoimmuneDiseaseBiomarker rdf:type owl:Class ;
rdfs:subClassOf :Biomarker .
### http://hadatac.org/ont/chear#Barium
:Barium rdf:type owl:Class ;
rdfs:subClassOf :MetalExposureBiomarker .
### http://hadatac.org/ont/chear#Bile
:Bile rdf:type owl:Class ;
rdfs:subClassOf <http://semanticscience.org/resource/SIO_010051> .
### http://hadatac.org/ont/chear#Biomarker
:Biomarker rdf:type owl:Class ;
rdfs:subClassOf <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic> .
### http://hadatac.org/ont/chear#Biomolecule
:Biomolecule rdf:type owl:Class ;
rdfs:subClassOf <http://semanticscience.org/resource/SIO_010046> .
### http://hadatac.org/ont/chear#BirthBodyLength
:BirthBodyLength rdf:type owl:Class ;
rdfs:subClassOf :BirthCharacteristic .
### http://hadatac.org/ont/chear#BirthCharacteristic
:BirthCharacteristic rdf:type owl:Class ;
rdfs:subClassOf <http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Characteristic> .
### http://hadatac.org/ont/chear#BirthGestationalAge
:BirthGestationalAge rdf:type owl:Class ;
rdfs:subClassOf :BirthCharacteristic .
### http://hadatac.org/ont/chear#BirthHeadCircumference
:BirthHeadCircumference rdf:type owl:Class ;
rdfs:subClassOf :BirthCharacteristic .
### http://hadatac.org/ont/chear#BirthWeight
:BirthWeight rdf:type owl:Class ;
rdfs:subClassOf :BirthCharacteristic .
### http://hadatac.org/ont/chear#BloodFluid
:BloodFluid rdf:type owl:Class ;
rdfs:subClassOf <http://semanticscience.org/resource/SIO_010051> .
### http://hadatac.org/ont/chear#BloodPlasma
:BloodPlasma rdf:type owl:Class ;
rdfs:subClassOf :BloodFluid .
### http://hadatac.org/ont/chear#BoneDiseaseBiomarker
:BoneDiseaseBiomarker rdf:type owl:Class ;
rdfs:subClassOf :Biomarker .
### http://hadatac.org/ont/chear#Bone_Specific_Alkaline_Phosphatase
:Bone_Specific_Alkaline_Phosphatase rdf:type owl:Class ;
rdfs:subClassOf :BoneDiseaseBiomarker .
### http://hadatac.org/ont/chear#Brain_Natriuretic_Peptide
:Brain_Natriuretic_Peptide rdf:type owl:Class ;
rdfs:subClassOf :CardiacBiomarker .
### http://hadatac.org/ont/chear#CA19_9
:CA19_9 rdf:type owl:Class ;
rdfs:subClassOf :OncologyBiomarker .
### http://hadatac.org/ont/chear#CK
:CK rdf:type owl:Class ;
rdfs:subClassOf :CardiacBiomarker .
### http://hadatac.org/ont/chear#CKMB
:CKMB rdf:type owl:Class ;
rdfs:subClassOf :CardiacBiomarker .
### http://hadatac.org/ont/chear#CRPhs
:CRPhs rdf:type owl:Class ;
rdfs:subClassOf :InflammationOrImmunityBiomarker .
### http://hadatac.org/ont/chear#Cadmium
:Cadmium rdf:type owl:Class ;
rdfs:subClassOf :MetalExposureBiomarker .
### http://hadatac.org/ont/chear#Calcium
:Calcium rdf:type owl:Class ;
rdfs:subClassOf :BoneDiseaseBiomarker .
### http://hadatac.org/ont/chear#Capillary_Electrophoresis_Instrument
:Capillary_Electrophoresis_Instrument rdf:type owl:Class ;
rdfs:subClassOf vstoi:PhysicalInstrument ;
vstoi:hasWebDocumentation <http://sciex.com/products/capillary-electrophoresis-instruments> ;
rdfs:comment "Optimize your workflow efficiency with these capillary electrophoresis systems - from the highly sensitive multiplex gene expression capabilities of the GeXP Genetic Analysis System and the high-resolution applications of the PA 800 plus Pharmaceutical Analysis System, to the exceedingly sensitive CESI 8000 High Performance Separation-ESI Module." .
### http://hadatac.org/ont/chear#Carcinogenic_Embryonic_Antigen
:Carcinogenic_Embryonic_Antigen rdf:type owl:Class ;
rdfs:subClassOf :OncologyBiomarker .
### http://hadatac.org/ont/chear#CardiacBiomarker
:CardiacBiomarker rdf:type owl:Class ;
rdfs:subClassOf :Biomarker .
### http://hadatac.org/ont/chear#Chemiluminescent
:Chemiluminescent rdf:type owl:Class ;
rdfs:subClassOf :Assay ;
vstoi:hasMeasuredCharacteristic :Alpha_Foetoprotein ,
:Carcinogenic_Embryonic_Antigen ,
:Cortisol ,
:Erythropoietin ,
:Ferritin ,
:Folates ,
:Prostate_Specific_Antigen ,
:Vitamin_B12 ;
rdfs:comment "Chemiluminescent" .
### http://hadatac.org/ont/chear#Chlamydia_Trachomalis
:Chlamydia_Trachomalis rdf:type owl:Class ;
rdfs:subClassOf :InfectiousDiseaseBiomarker .
### http://hadatac.org/ont/chear#Cholesterol
:Cholesterol rdf:type owl:Class ;
rdfs:subClassOf :LipidMetabolismBiomarker .
### http://hadatac.org/ont/chear#Cholesteryl_Ester_Transfer_Protein
:Cholesteryl_Ester_Transfer_Protein rdf:type owl:Class ;
rdfs:subClassOf :DiabetesBiomarker .
### http://hadatac.org/ont/chear#Clusterin
:Clusterin rdf:type owl:Class ;
rdfs:subClassOf :InflammationOrImmunityBiomarker .
### http://hadatac.org/ont/chear#Coagulometry
:Coagulometry rdf:type owl:Class ;
rdfs:subClassOf :Assay ;
rdfs:comment "Coagulometry" .
### http://hadatac.org/ont/chear#Cobalt
:Cobalt rdf:type owl:Class ;
rdfs:subClassOf :MetalExposureBiomarker .
### http://hadatac.org/ont/chear#Collagen_Type_IV
:Collagen_Type_IV rdf:type owl:Class ;
rdfs:subClassOf :NephrologyBiomarker .
### http://hadatac.org/ont/chear#Colorimetric
:Colorimetric rdf:type owl:Class ;
rdfs:subClassOf :Assay ;