PackageCompiler.jl :) And custom PyPlot version

Author: tfiers

Manifest.toml

@@ -206,9 +206,9 @@ version = "1.10.0"
 
 [[deps.DataFrames]]
 deps = ["Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "daa21eb85147f72e41f6352a57fccea377e310a9"
+git-tree-sha1 = "6bce52b2060598d8caaed807ec6d6da2a1de949e"
 uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "1.3.4"
+version = "1.3.5"
 
 [[deps.DataFramesMeta]]
 deps = ["Chain", "DataFrames", "MacroTools", "OrderedCollections", "Reexport"]
@@ -332,12 +332,6 @@ git-tree-sha1 = "94f5101b96d2d968ace56f7f2db19d0a5f592e28"
 uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
 version = "1.15.0"
 
-[[deps.FilePaths]]
-deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"]
-git-tree-sha1 = "919d9412dbf53a2e6fe74af62a73ceed0bce0629"
-uuid = "8fc22ac5-c921-52a6-82fd-178b2807b824"
-version = "0.8.3"
-
 [[deps.FilePathsBase]]
 deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"]
 git-tree-sha1 = "129b104185df66e408edd6625d480b7f9e9823a0"
@@ -647,6 +641,10 @@ git-tree-sha1 = "9e72f9e890c46081dbc0ebeaf6ccaffe16e51626"
 uuid = "10f19ff3-798f-405d-979b-55457f8fc047"
 version = "0.1.8"
 
+[[deps.LazyArtifacts]]
+deps = ["Artifacts", "Pkg"]
+uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
+
 [[deps.LeftChildRightSiblingTrees]]
 deps = ["AbstractTrees"]
 git-tree-sha1 = "b864cb409e8e445688bc478ef87c0afe4f6d1f8d"
@@ -835,7 +833,7 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
 version = "0.2.2"
 
 [[deps.MyToolbox]]
-deps = ["BenchmarkTools", "ComponentArrays", "DataFrames", "DataStructures", "FilePaths", "FilePathsBase", "IJulia", "JLD2", "LaTeXStrings", "Logging", "LoggingExtras", "Match", "Parameters", "PartialFunctions", "Pkg", "PrettyTables", "Printf", "Profile", "ProfileView", "ProgressMeter", "PyFormattedStrings", "PyPlot", "Random", "Reexport", "Requires", "Setfield", "StatsBase"]
+deps = ["BenchmarkTools", "ComponentArrays", "DataFrames", "DataStructures", "FilePathsBase", "IJulia", "JLD2", "LaTeXStrings", "Logging", "LoggingExtras", "Match", "Parameters", "PartialFunctions", "Pkg", "PrettyTables", "Printf", "Profile", "ProfileView", "ProgressMeter", "PyFormattedStrings", "PyPlot", "Random", "Reexport", "Requires", "Setfield", "StatsBase"]
 path = "pkg/MyToolbox"
 uuid = "54cd1024-cafd-4d62-948d-ced4874502bf"
 version = "0.1.0"
@@ -921,6 +919,12 @@ git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
 version = "0.11.16"
 
+[[deps.PackageCompiler]]
+deps = ["Artifacts", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs"]
+git-tree-sha1 = "c497e2bb9c2127a411b74dbff56b11f258d67d12"
+uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d"
+version = "2.0.9"
+
 [[deps.Pango_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "3a121dfbba67c94a5bec9dde613c3d0cbcf3a12b"
@@ -1030,9 +1034,11 @@ version = "0.1.10"
 
 [[deps.PyPlot]]
 deps = ["Colors", "LaTeXStrings", "PyCall", "Sockets", "Test", "VersionParsing"]
-git-tree-sha1 = "14c1b795b9d764e1784713941e787e1384268103"
+git-tree-sha1 = "b797472d2d26a04fd731e2624f7d1371a7523fd6"
+repo-rev = "master"
+repo-url = "https://github.com/xzackli/PyPlot.jl"
 uuid = "d330b81b-6aea-500a-939a-2ce795aea3ee"
-version = "2.10.0"
+version = "2.9.0"
 
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
@@ -1070,6 +1076,12 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
 uuid = "189a3867-3050-52da-a836-e630ba90ab69"
 version = "1.2.2"
 
+[[deps.RelocatableFolders]]
+deps = ["SHA", "Scratch"]
+git-tree-sha1 = "cdbd3b1338c72ce29d9584fdbe9e9b70eeb5adca"
+uuid = "05181044-ff0b-4ac5-8273-598c1e38db00"
+version = "0.1.3"
+
 [[deps.Requires]]
 deps = ["UUIDs"]
 git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
@@ -1131,6 +1143,12 @@ path = "pkg/Sciplotlib"
 uuid = "61be95e5-9550-4d5f-a203-92a5acbc3116"
 version = "0.1.0"
 
+[[deps.Scratch]]
+deps = ["Dates"]
+git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd"
+uuid = "6c6a2e73-6563-6170-7368-637461726353"
+version = "1.1.1"
+
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 

Project.toml

@@ -1,15 +1,20 @@
 [deps]
 Chain = "8be319e6-bccf-4806-a6f7-6fae938471bc"
+ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66"
 Cthulhu = "f68482b8-f384-11e8-15f7-abe071a5a75f"
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DataFramesMeta = "1313f7d8-7da2-5740-9ea0-a2ca25f37964"
 FilePathsBase = "48062228-2e41-5def-b9a4-89aafe57970f"
 IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
 LsqFit = "2fda8390-95c7-5789-9bda-21331edee243"
 MyToolbox = "54cd1024-cafd-4d62-948d-ced4874502bf"
+PackageCompiler = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d"
 ProfileView = "c46f51b8-102a-5cf2-8d2c-8597cb0e0da7"
+PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
 PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
 Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 Sciplotlib = "61be95e5-9550-4d5f-a203-92a5acbc3116"
 Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
+Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
 TerminalLoggers = "5d786b92-1e48-4d6f-9151-6b4477ca9bed"
 VoltoMapSim = "f713100b-c48c-421a-b480-5fcb4c589a9e"

nb/2022-09-15__Two-pass_conntest_ptp-then-cor.ipynb

@@ -0,0 +1,53 @@
+# -*- coding: utf-8 -*-
+# ---
+# jupyter:
+#   jupytext:
+#     formats: ipynb,jl:light
+#     text_representation:
+#       extension: .jl
+#       format_name: light
+#       format_version: '1.5'
+#       jupytext_version: 1.13.7
+#   kernelspec:
+#     display_name: Julia-preloaded 1.7.0
+#     language: julia
+#     name: julia-preloaded-1.7
+# ---
+
+# # 2022-09-15 • Two-pass connection test: peak-to-peak, then correlation with found average
+
+# ## Imports
+
+# +
+#
+# -
+
+using Revise
+
+using MyToolbox
+
+using VoltoMapSim
+
+# ## Params
+
+p = get_params(
+    duration = 10minutes,
+    p_conn = 0.04,
+    g_EE = 1,
+    g_EI = 1,
+    g_IE = 4,
+    g_II = 4,
+    ext_current = Normal(-0.5 * pA/√seconds, 5 * pA/√seconds),
+    E_inh = -80 * mV,
+    record_v = [1:40; 801:810],
+);
+
+# ## Run sim
+
+s = cached(sim, [p.sim]);
+
+s = augment(s, p);
+
+plotSTA(23=>1,s,p);
+
+

nb/2022-09-15__Two-pass_conntest_ptp-then-cor.jl

@@ -0,0 +1 @@
+*.dll

scripts/.gitignore

@@ -0,0 +1,8 @@
+
+# See https://github.com/JuliaPy/PyPlot.jl/pull/480
+# and ./to_precompile.jl
+# Needs
+#    Pkg.add(url="https://github.com/xzackli/PyPlot.jl")
+
+using PyPlot
+PyPlot.delay_init_until_cell[] = true

scripts/pyplot_delay_init.jl

@@ -0,0 +1,23 @@
+# For use with PackageCompiler.jl, to generate a "system image", like here:
+# https://julialang.github.io/PackageCompiler.jl/stable/examples/plots.html.
+#
+# The goal is having to wait less long for package imports and first function calls in a
+# fresh Julia session.
+#
+# Commands to run, in the repo root:
+#=
+using PackageCompiler
+pkgs = [:Revise, :PyCall, :IJulia, :PyPlot, :DataFrames, :ComponentArrays]
+sysimage_path             = "scripts/mysys.dll"
+precompile_execution_file = "scripts/to_precompile.jl"
+script                    = "scripts/pyplot_delay_init.jl"
+create_sysimage(pkgs; sysimage_path, precompile_execution_file, script)
+=#
+
+using PyPlot, DataFrames, ComponentArrays
+
+df = DataFrame([(a=1, b=2), (a=2, b=2)])
+cv = ComponentVector(a=3, b=8)
+
+fig, ax = plt.subplots()
+ax.plot(df.a, collect(cv))