chore(ci): Try another config

Author: esloch

.github/workflows/main.yaml

@@ -26,69 +26,77 @@ env:
   ES_HOST_VOLUME: /opt/services/data/elasticsearch/data
 
 jobs:
-  build:
+  test:
     runs-on: ubuntu-latest
     timeout-minutes: 10
     concurrency:
-      group: ci-${{ github.ref }}
+      group: ci-${{ github.event_name }}-${{ github.ref }}
       cancel-in-progress: true
 
     defaults:
       run:
         shell: bash -l {0}
 
     steps:
-    - uses: actions/checkout@v3
-
-    - uses: mamba-org/setup-micromamba@v1
-      with:
-        miniconda-version: "latest"
-        mamba-version: "*"
-        environment-file: conda/base.yaml
-        channels: conda-forge,nodefaults
-        channel-priority: true
-        activate-environment: es-journals
-        use-mamba: true
-        miniforge-variant: Mambaforge
-
-    - name: Set Environment Variable
-      run: echo "GITHUB_PAT=${{ secrets.DEVTOOLS_PAT }}" >> $GITHUB_ENV
-
-    - name: Create environment variables files
-      run: |
-        envsubst < .env.tpl > .env
-
-    - name: Check if poetry.lock is updated
-      run: poetry check
-
-    - name: Install dependencies
-      run: poetry install --no-root
-
-    - name: Clean-up
-      run: makim clean.tmp
-
-    - name: Setup development environment for Rxivs
-      run: |
-        for rxiv_name in biorxiv medrxiv; do
-            makim develop.setup-dev-env --index-name $rxiv_name
-        done
-
-    - name: Start Elasticsearch
-      run: |
-        sugar compose-ext start --options "-d"
-
-    - name: Fetch and process MedRxiv data
-      run: |
-        bash scripts/fetch_rxivx_data.sh medrxiv
-
-    # - name: Count documents in MedRxiv index
-    #   run: |
-    #     makim develop.count-docs-in-index --index-name medrxiv
-
-
-    - name: Run tests
-      run: makim tests.unittest
-
-    - name: Setup tmate session
-      if: "${{ failure() }}"
-      uses: mxschmitt/action-tmate@v3
+      - uses: actions/checkout@v4
+
+      - name: Cache Conda Packages
+        uses: actions/cache@v3
+        with:
+          path: ~/.conda/envs/es-journals
+          key: ubuntu-latest-conda-${{ hashFiles('conda/base.yaml') }}
+          restore-keys: |
+            ubuntu-latest-conda-
+
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniforge-version: latest
+          environment-file: conda/base.yaml
+          channels: conda-forge,nodefaults
+          activate-environment: es-journals
+          auto-update-conda: true
+          conda-solver: libmamba
+
+      - name: Set Environment Variable
+        run: echo "GITHUB_PAT=${{ secrets.DEVTOOLS_PAT }}" >> $GITHUB_ENV
+
+      - name: Create environment variables files
+        run: |
+          envsubst < .env.tpl > .env
+
+      - name: Check if poetry.lock is updated
+        run: poetry check
+
+      - name: Install dependencies
+        run: |
+          poetry config virtualenvs.create false
+          poetry install --no-root
+
+      - name: Clean-up
+        run: makim clean.tmp
+
+      - name: Setup development environment for Rxivs
+        run: |
+          for rxiv_name in biorxiv medrxiv; do
+              makim develop.setup-dev-env --index-name $rxiv_name
+          done
+
+      - name: Start Elasticsearch
+        run: |
+          sugar compose-ext start --options "-d"
+
+      - name: Fetch and process MedRxiv data
+        run: |
+          bash scripts/fetch_rxivx_data.sh medrxiv
+
+      # - name: Count documents in MedRxiv index
+      #   run: |
+      #     makim develop.count-docs-in-index --index-name medrxiv
+
+
+      - name: Run tests
+        run: makim tests.unittest
+
+      - name: Setup tmate session
+        if: "${{ failure() }}"
+        uses: mxschmitt/action-tmate@v3

containers/compose.elasticsearch.yaml

@@ -14,7 +14,7 @@ services:
         source: ${ES_HOST_VOLUME}
         target: /usr/share/elasticsearch/data
     ports:
-      - "${ES_PORT}:9200"
+      - "9200:9200"
     env_file: ../.env
     environment:
       - node.name=es01