changed documentation in the website and referred to gitbook

Author: tiagofilipe12

patlas/db_manager/db_app/templates/assembly.html

@@ -40,15 +40,8 @@ <h3 class="modal-title">Select input file (consensus results)</h3>
           <div class="panel-body">
 
             <li>
-              <a href="https://github.com/tiagofilipe12/pATLASflow#requirements"
-                 target="_blank">Install instructions</a>
-            </li>
-
-            <li>
-              Execute command:<br>
-              <span style="color: grey">
-                nextflow run tiagofilipe12/pATLASflow --mash_screen --mapping
-              </span>
+              <a href="https://patlas.gitbook.io/docs/usage/sidebar/import"
+                 target="_blank">Instructions</a>
             </li>
             <li>
               Import desired *.json results here.

patlas/db_manager/db_app/templates/consensus.html

@@ -421,7 +421,7 @@ <h3 class="modal-title">Select input file (mapping results)</h3>
         <div class="panel panel-info">
           <div class="panel-heading" style="background-color:#6292A9; color: white">How to run</div>
           <div class="panel-body">
-            {% include 'mapping.html' %}
+            {% include 'instructions.html' %}
           </div>
         </div>
         <div class="sampleImportWrapperClass">
@@ -513,7 +513,7 @@ <h3 class="modal-title">Select input file (mash results)</h3>
         <div class="panel panel-info">
           <div class="panel-heading" style="background-color:#6292A9; color: white">How to run</div>
           <div class="panel-body">
-            {% include 'mash_screen.html' %}
+            {% include 'instructions.html' %}
           </div>
         </div>
         <div class="sampleImportWrapperClass">
@@ -602,7 +602,7 @@ <h3 class="modal-title">Select input file (sequence import)</h3>
         <div class="panel panel-info">
           <div class="panel-heading" style="background-color:#6292A9; color: white">How to run</div>
           <div class="panel-body">
-            {% include 'assembly.html' %}
+            {% include 'instructions.html' %}
           </div>
         </div>
         <div class="sampleImportWrapperClass">

patlas/db_manager/db_app/templates/index.html

@@ -0,0 +1,7 @@
+<li>
+  <a href="https://patlas.gitbook.io/docs/usage/sidebar/import"
+     target="_blank">Instructions</a>
+</li>
+<li>
+  Import desired *.json file here.
+</li>