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‎.github/workflows/R-CMD-check.yaml‎

Lines changed: 19 additions & 15 deletions
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@@ -1,4 +1,4 @@
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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#
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# NOTE: This workflow is overkill for most R packages and
@@ -22,37 +22,41 @@ jobs:
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fail-fast: false
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matrix:
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config:
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- {os: macOS-latest, r: 'release'}
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- {os: macos-latest, r: 'release'}
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- {os: windows-latest, r: 'release'}
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# Use 3.6 to trigger usage of RTools35
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- {os: windows-latest, r: '3.6'}
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# use 4.1 to check with rtools40's older compiler
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- {os: windows-latest, r: '4.1'}
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# Use older ubuntu to maximise backward compatibility
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- {os: ubuntu-18.04, r: 'devel', http-user-agent: 'release'}
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- {os: ubuntu-18.04, r: 'release'}
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- {os: ubuntu-18.04, r: 'oldrel-1'}
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- {os: ubuntu-18.04, r: 'oldrel-2'}
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- {os: ubuntu-18.04, r: 'oldrel-3'}
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- {os: ubuntu-18.04, r: 'oldrel-4'}
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- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
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- {os: ubuntu-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'oldrel-1'}
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- {os: ubuntu-latest, r: 'oldrel-2'}
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- {os: ubuntu-latest, r: 'oldrel-3'}
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- {os: ubuntu-latest, r: 'oldrel-4'}
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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R_KEEP_PKG_SOURCE: yes
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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- uses: r-lib/actions/setup-pandoc@v1
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- uses: r-lib/actions/setup-pandoc@v2
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- uses: r-lib/actions/setup-r@v1
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- uses: r-lib/actions/setup-r@v2
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with:
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r-version: ${{ matrix.config.r }}
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http-user-agent: ${{ matrix.config.http-user-agent }}
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v1
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- uses: r-lib/actions/setup-r-dependencies@v2
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with:
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extra-packages: rcmdcheck
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extra-packages: any::rcmdcheck
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needs: check
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- uses: r-lib/actions/check-r-package@v1
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- uses: r-lib/actions/check-r-package@v2
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with:
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upload-snapshots: true

‎.github/workflows/pkgdown.yaml‎

Lines changed: 24 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -1,8 +1,10 @@
1-
# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
1+
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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on:
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push:
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branches: [main, master]
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pull_request:
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branches: [main, master]
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release:
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types: [published]
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workflow_dispatch:
@@ -12,24 +14,35 @@ name: pkgdown
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jobs:
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pkgdown:
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runs-on: ubuntu-latest
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# Only restrict concurrency for non-PR jobs
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concurrency:
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group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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permissions:
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contents: write
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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- uses: r-lib/actions/setup-pandoc@v1
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- uses: r-lib/actions/setup-pandoc@v2
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- uses: r-lib/actions/setup-r@v1
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- uses: r-lib/actions/setup-r@v2
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with:
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v1
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- uses: r-lib/actions/setup-r-dependencies@v2
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with:
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extra-packages: pkgdown
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extra-packages: any::pkgdown, local::.
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needs: website
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- name: Deploy package
32-
run: |
33-
git config --local user.name "$GITHUB_ACTOR"
34-
git config --local user.email "[email protected]"
35-
Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
38+
- name: Build site
39+
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
40+
shell: Rscript {0}
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42+
- name: Deploy to GitHub pages 🚀
43+
if: github.event_name != 'pull_request'
44+
uses: JamesIves/[email protected]
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with:
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clean: false
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branch: gh-pages
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folder: docs

‎.github/workflows/pr-commands.yaml‎

Lines changed: 18 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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on:
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issue_comment:
@@ -14,22 +14,24 @@ jobs:
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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19-
- uses: r-lib/actions/pr-fetch@v1
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- uses: r-lib/actions/pr-fetch@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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23-
- uses: r-lib/actions/setup-r@v1
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- uses: r-lib/actions/setup-r@v2
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with:
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use-public-rspm: true
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27-
- uses: r-lib/actions/setup-r-dependencies@v1
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- uses: r-lib/actions/setup-r-dependencies@v2
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with:
29-
extra-packages: roxygen2
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extra-packages: any::roxygen2
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needs: pr-document
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3132
- name: Document
32-
run: Rscript -e 'roxygen2::roxygenise()'
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run: roxygen2::roxygenise()
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shell: Rscript {0}
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- name: commit
3537
run: |
@@ -38,7 +40,7 @@ jobs:
3840
git add man/\* NAMESPACE
3941
git commit -m 'Document'
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- uses: r-lib/actions/pr-push@v1
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- uses: r-lib/actions/pr-push@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
54+
- uses: actions/checkout@v3
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54-
- uses: r-lib/actions/pr-fetch@v1
56+
- uses: r-lib/actions/pr-fetch@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}
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58-
- uses: r-lib/actions/setup-r@v1
60+
- uses: r-lib/actions/setup-r@v2
5961

6062
- name: Install dependencies
61-
run: Rscript -e 'install.packages("styler")'
63+
run: install.packages("styler")
64+
shell: Rscript {0}
6265

6366
- name: Style
64-
run: Rscript -e 'styler::style_pkg()'
67+
run: styler::style_pkg()
68+
shell: Rscript {0}
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6670
- name: commit
6771
run: |
@@ -70,6 +74,6 @@ jobs:
7074
git add \*.R
7175
git commit -m 'Style'
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- uses: r-lib/actions/pr-push@v1
77+
- uses: r-lib/actions/pr-push@v2
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with:
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repo-token: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/test-coverage.yaml‎

Lines changed: 26 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
22
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
33
on:
44
push:
@@ -15,16 +15,36 @@ jobs:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
1616

1717
steps:
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- uses: actions/checkout@v2
18+
- uses: actions/checkout@v3
1919

20-
- uses: r-lib/actions/setup-r@v1
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- uses: r-lib/actions/setup-r@v2
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with:
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use-public-rspm: true
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24-
- uses: r-lib/actions/setup-r-dependencies@v1
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- uses: r-lib/actions/setup-r-dependencies@v2
2525
with:
26-
extra-packages: covr
26+
extra-packages: any::covr
27+
needs: coverage
2728

2829
- name: Test coverage
29-
run: covr::codecov()
30+
run: |
31+
covr::codecov(
32+
quiet = FALSE,
33+
clean = FALSE,
34+
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
35+
)
3036
shell: Rscript {0}
37+
38+
- name: Show testthat output
39+
if: always()
40+
run: |
41+
## --------------------------------------------------------------------
42+
find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
43+
shell: bash
44+
45+
- name: Upload test results
46+
if: failure()
47+
uses: actions/upload-artifact@v3
48+
with:
49+
name: coverage-test-failures
50+
path: ${{ runner.temp }}/package

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