-
Notifications
You must be signed in to change notification settings - Fork 292
Closed
Description
I am parallelising some code for an R package I maintain. I want to resubmit this to CRAN, but it fails the GitHub Actions R-CMD-check, but only for Windows latest release.
All the other platforms pass. The code that fails is the in_parallel() code I think, I get the error:
ℹ In argument: `mods = map(...)`.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `library()`:
! there is no package called 'rTPC'
But I cannot work out why. Reproducible code is below. Is there something I am missing? quickfit_tpc_multi() is a function of rTPC, I have also tried rTPC::quickfit_tpc_multi() and the same problem persists.
# load in packages
library(rTPC)
library(nls.multstart)
library(broom)
library(tidyverse)
library(mirai)
# load in data
data('chlorella_tpc')
d <- chlorella_tpc
head(d)
# start timer
parallel_start <- Sys.time()
# start parallel session
daemons(3)
# fit models as before, but in parallel
d_mods_para <- d %>%
nest(data = c(temp, rate)) %>%
mutate(
mods = map(
data,
in_parallel(
\(x) {
library(rTPC)
quickfit_tpc_multi(
data = x,
c(
"briereextended_2021",
"gaussianmodified_2006",
"briere1simplified_1999",
"tomlinsonphillips_2015",
'lactin2_1995'
),
"temp",
"rate",
iter = list(150, 150, c(4, 4, 4), 150, 200),
lhstype = 'random'
)
}
),
.progress = TRUE
)
) %>%
tidyr::unnest(mods)
# close parallel session
daemons(0)
# end time of parallel
parallel_end <- Sys.time()
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels