Fix several sources of invalidation

These changes fix invalidation from the JuliaData ecosystem,
presumably mostly due to new AbstractString subtypes.

Author: timholy

src/packagedef.jl

@@ -312,7 +312,6 @@ end
 
 function eval_rex(rex::RelocatableExpr, exs_sigs_old::ExprsSigs, mod::Module; mode::Symbol=:eval)
     return with_logger(_debug_logger) do
-        sigs, includes = nothing, nothing
         rexo = getkey(exs_sigs_old, rex, nothing)
         # extract the signatures and update the line info
         if rexo === nothing
@@ -333,13 +332,16 @@ function eval_rex(rex::RelocatableExpr, exs_sigs_old::ExprsSigs, mod::Module; mo
                 end
             end
             storedeps(deps, rex, mod)
+            return sigs, includes
         else
-            sigs = exs_sigs_old[rexo]
+            sigs, includes = exs_sigs_old[rexo], nothing
             # Update location info
             ln, lno = firstline(unwrap(rex)), firstline(unwrap(rexo))
             if sigs !== nothing && !isempty(sigs) && ln != lno
                 ln, lno = ln::LineNumberNode, lno::LineNumberNode
-                @debug "LineOffset" _group="Action" time=time() deltainfo=(sigs, lno=>ln)
+                let sigs=sigs   # #15276
+                    @debug "LineOffset" _group="Action" time=time() deltainfo=(sigs, lno=>ln)
+                end
                 for sig in sigs
                     locdefs = CodeTracking.method_info[sig]::AbstractVector
                     ld = map(pr->linediff(lno, pr[1]), locdefs)
@@ -352,8 +354,8 @@ function eval_rex(rex::RelocatableExpr, exs_sigs_old::ExprsSigs, mod::Module; mo
                     locdefs[idx] = (newloc(methloc, ln, lno), methdef)
                 end
             end
+            return sigs, includes
         end
-        return sigs, includes
     end
 end
 
@@ -651,7 +653,7 @@ function handle_deletions(pkgdata, file)
     end
     topmod = first(keys(mexsold))
     fileok = file_exists(String(filep)::String)
-    mexsnew = fileok ? parse_source(filep, topmod) : ModuleExprsSigs(topmod)
+    mexsnew = fileok ? Base.invokelatest(parse_source, filep, topmod) : ModuleExprsSigs(topmod)
     if mexsnew !== nothing
         delete_missing!(mexsold, mexsnew)
     end

src/pkgs.jl

@@ -357,13 +357,14 @@ end
 function has_writable_paths(pkgdata::PkgData)
     dir = basedir(pkgdata)
     isdir(dir) || return true
-    haswritable = false
+    haswritable = Ref(false)    # avoids Core.Box
     cd(dir) do
         for file in srcfiles(pkgdata)
-            haswritable |= iswritable(file)
+            isa(file, AbstractString) || continue
+            haswritable[] |= iswritable(file::String)
         end
     end
-    return haswritable
+    return haswritable[]
 end
 
 function watch_includes(mod::Module, fn::AbstractString)
@@ -439,6 +440,8 @@ function watch_manifest(mfile)
                             files = String[]
                             mustnotify = false
                             for file in srcfiles(pkgdata)
+                                isa(file, AbstractString) || continue
+                                file = file::String
                                 fi = try
                                     maybe_parse_from_cache!(pkgdata, file)
                                 catch err

src/utils.jl

@@ -27,7 +27,8 @@ end
 function unique_dirs(iter)
     udirs = Set{String}()
     for file in iter
-        dir, basename = splitdir(file)
+        isa(file, AbstractString) || continue
+        dir, basename = splitdir(file::String)
         push!(udirs, dir)
     end
     return udirs