This repository contains code relating to the Curated Cancer Cell Atlas (3CA), including code for reproducing analyses and figures on the 3CA website, and code for reproducing the analysis in Gavish et al. "The hallmarks of transcriptional intra-tumor heterogeneity".
Code for reproducing the analyses in the Gavish et al. study is contained in the ITH_hallmarks directory.
The 3CA_v2 directory code for new analyses conducted on the expanded version of 3CA.