FPbase/.github/workflows/ci.yml at fcfbc80218a901a2d7d1a31027f7dad76cd75627 · tlambert03/FPbase · GitHub

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name: CI

# Enable Buildkit and let compose use it to speed up image building
env:
  DOCKER_BUILDKIT: 1
  COMPOSE_DOCKER_CLI_BUILD: 1

  # postgres://user:password@host:port/database
  DATABASE_URL: "postgres://postgres:postgres@localhost:5432/postgres"
  UV_FROZEN: 1
  NCBI_API_KEY: ${{ secrets.NCBI_API_KEY }}

on:
  pull_request:
    branches: ["develop", "main"]
  push:
    branches: ["develop", "main"]
  workflow_dispatch:

concurrency:
  group: ${{ github.head_ref || github.run_id }}
  cancel-in-progress: true

jobs:
  typing:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout Code Repository
        uses: actions/checkout@v5
      - uses: astral-sh/setup-uv@v7
        with:
          enable-cache: true
      - name: Run basedpyright
        run: uv run --group typing --no-dev basedpyright

  typing-typescript:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v5
      - uses: pnpm/action-setup@v4
        with:
          run_install: false
      - uses: actions/setup-node@v6
        with:
          node-version-file: package.json
          cache: "pnpm"
      - name: Install node Dependencies
        run: pnpm install
      - name: Run TypeScript type checking
        run: pnpm typecheck

  check-migrations:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout Code Repository
        uses: actions/checkout@v5
      - uses: astral-sh/setup-uv@v7
        with:
          enable-cache: true
      - name: Check for new migrations
        run: uv run backend/manage.py makemigrations --check --noinput

  test:
    runs-on: ubuntu-latest
    services:
      postgres:
        image: postgres:15
        ports:
          - 5432:5432
        env:
          POSTGRES_PASSWORD: postgres
    steps:
      - uses: actions/checkout@v5

      - uses: astral-sh/setup-uv@v7
        with:
          version: latest
          enable-cache: true

      - uses: pnpm/action-setup@v4
        with:
          run_install: false

      - uses: actions/setup-node@v6
        with:
          node-version-file: package.json
          cache: "pnpm"

      - name: Install node Dependencies
        run: pnpm install

      - name: Test
        run: |
          uv sync --group test --no-dev
          uv run --no-sync pytest -n auto -v --cov --cov-report=xml

      - name: coverage
        uses: codecov/codecov-action@v5
        with:
          token: ${{ secrets.CODECOV_TOKEN }}

  test-e2e:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        browser: [chromium, firefox, webkit]
    services:
      postgres:
        image: postgres:15
        ports:
          - 5432:5432
        env:
          POSTGRES_PASSWORD: postgres
    steps:
      - uses: actions/checkout@v5

      - uses: astral-sh/setup-uv@v7
        with:
          version: latest
          enable-cache: true

      - uses: pnpm/action-setup@v4
        with:
          run_install: false

      - name: Install Node.js
        uses: actions/setup-node@v6
        with:
          node-version-file: package.json
          cache: "pnpm"

      - name: Install node Dependencies
        run: pnpm install

      - run: uv sync --group test --no-dev

      - name: Ensure browsers are installed
        run: uv run --no-sync playwright install ${{ matrix.browser }} --with-deps

      - name: Test
        run: uv run --no-sync pytest backend/tests_e2e/ --create-db --migrations -v --browser ${{ matrix.browser }} --cov --cov-report=xml --tracing=retain-on-failure

      - uses: actions/upload-artifact@v5
        if: ${{ !cancelled() }}
        with:
          name: playwright-traces-${{ matrix.browser }}
          path: test-results/

      - name: coverage
        uses: codecov/codecov-action@v5
        with:
          token: ${{ secrets.CODECOV_TOKEN }}