MANIFEST.in

# include meta data
include README.md
include LICENSE
include CLA
include Dockerfile
include Dockerfile_test
# include documentation and files needed by documentation
recursive-include docs/source *.py *.rst *.txt
include docs/changelog.sh docs/Makefile docs/pack_testupload.sh docs/testdownload_install.sh
include requirements-rtd.txt
# include tests and files needed by tests
include .pylintrc tox.ini
recursive-include iCount/tests *.py
include iCount/tests/functional/*.txt
recursive-exclude docs presentations
recursive-exclude docs/presentations *
recursive-exclude docs/presentations/images *
recursive-include iCount/examples *
recursive-include iCount/examples/data *.txt *.fq.gz *.tsv *.png
recursive-include iCount/snakemake *.smk *.md
recursive-include iCount/snakemake/envs *.yaml