diff --git a/find-missing-snps-biobank.sh b/find-missing-snps-biobank.sh index b3b800b..7456e94 100755 --- a/find-missing-snps-biobank.sh +++ b/find-missing-snps-biobank.sh @@ -6,7 +6,7 @@ ALL_1000G_DIR=23andme-impute TMP_DIR=impute-out GEN_FILE=imputed-snps-biobank.gen -mkdir -p $OUT +mkdir -p $TMP_DIR rm -r $GEN_FILE # rs689 @@ -55,4 +55,4 @@ impute2 -m $ALL_1000G_DIR/genetic_map_chr7_combined_b37.txt \ -o $TMP_DIR/tmp_impute2 \ -phase \ -allow_large_regions -grep 'rs4948088 ' $TMP_DIR/tmp_impute2 >> $GEN_FILE \ No newline at end of file +grep 'rs4948088 ' $TMP_DIR/tmp_impute2 >> $GEN_FILE