Merge branch 'main' into main

Author: afilogo

.github/workflows/SpellCheck.yml

@@ -10,4 +10,4 @@ jobs:
       - name: Checkout Actions Repository
         uses: actions/checkout@v4
       - name: Check spelling
-        uses: crate-ci/typos@v1.31.2
+        uses: crate-ci/typos@v1.32.0

NEWS.md

@@ -5,11 +5,41 @@ Trixi.jl follows the interpretation of
 used in the Julia ecosystem. Notable changes will be documented in this file
 for human readability.
 
+## Changes when updating to v0.12 from v0.11.x
+
+#### Added
+
+- Arbitrary solution-dependent quantities can now be saved in the `SaveSolutionCallback` (and thus later on visualized) ([#2298]).
+
+#### Changed
+
+- When using the `VolumeIntegralSubcellLimiting` with the `SubcellLimiterIDP` the
+  `:limiting_coefficient` must be explicitly provided to the `SaveSolutionCallback` via
+  ```julia
+  save_sol_cb = SaveSolutionCallback(interval = 42,
+                                     extra_node_variables = (:limiting_coefficient,))
+  ```
+  i.e., is no longer automatically saved ([#2298]).
+
+#### Deprecated
+
+#### Removed
+
+- The shallow-water equation types `ShallowWaterEquations1D`, `ShallowWaterEquations2D`, and 
+  `ShallowWaterEquationsQuasi1D` have been removed from Trixi.jl and are now available via 
+  [TrixiShallowWater.jl](https://github.com/trixi-framework/TrixiShallowWater.jl/). 
+  This also affects the related functions `hydrostatic_reconstruction_audusse_etal`, 
+  `flux_nonconservative_audusse_etal`, and `FluxHydrostaticReconstruction`. ([#2379])
+- The additional `ìnitial_cache` entries in the caches of `SemidiscretizationHyperbolic`
+  and `SemidiscretizationHyperbolicParabolic`, and the corresponding keyword arguments of
+  their constructors have been removed. ([#2399])
 
 ## Changes in the v0.11 lifecycle
 
 #### Added
 
+- Added symmetry plane/reflective wall velocity+stress boundary conditions for the compressible Navier-Stokes equations in 2D and 3D. 
+  Currently available only for the `P4estMesh` mesh type, `GradientVariablesPrimitive`, and `Adiabatic` heat boundary condition ([#2416]).
 - Added `LaplaceDiffusionEntropyVariables1D`, `LaplaceDiffusionEntropyVariables2D`, and `LaplaceDiffusionEntropyVariables3D`. These add scalar diffusion to each
   equation of a system, but apply diffusion in terms of the entropy variables, which symmetrizes the viscous formulation and ensures semi-discrete entropy dissipation ([#2406]).
 - Added the three-dimensional multi-ion magneto-hydrodynamics (MHD) equations with a

Project.toml

@@ -1,7 +1,7 @@
 name = "Trixi"
 uuid = "a7f1ee26-1774-49b1-8366-f1abc58fbfcb"
 authors = ["Michael Schlottke-Lakemper <[email protected]>", "Gregor Gassner <[email protected]>", "Hendrik Ranocha <[email protected]>", "Andrew R. Winters <[email protected]>", "Jesse Chan <[email protected]>", "Andrés Rueda-Ramírez <[email protected]>"]
-version = "0.11.18-DEV"
+version = "0.12.1-DEV"
 
 [deps]
 Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"

README.md

@@ -58,7 +58,7 @@ installation and postprocessing procedures. Its features include:
   * Linearized Euler and acoustic perturbation equations
   * Hyperbolic diffusion equations for elliptic problems
   * Lattice-Boltzmann equations (D2Q9 and D3Q27 schemes)
-  * Shallow water equations
+  * Shallow water equations via [TrixiShallowWater.jl](https://github.com/trixi-framework/TrixiShallowWater.jl)
   * Several scalar conservation laws (e.g., linear advection, Burgers' equation, LWR traffic flow)
 * Multi-physics simulations
   * [Self-gravitating gas dynamics](https://github.com/trixi-framework/paper-self-gravitating-gas-dynamics)

benchmark/Project.toml

@@ -8,4 +8,4 @@ Trixi = "a7f1ee26-1774-49b1-8366-f1abc58fbfcb"
 BenchmarkTools = "0.5, 0.7, 1.0"
 OrdinaryDiffEq = "5.65, 6"
 PkgBenchmark = "0.2.10"
-Trixi = "0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.10, 0.11"
+Trixi = "0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.10, 0.11, 0.12"

benchmark/benchmarks.jl

@@ -14,7 +14,7 @@ for elixir in [# 1D
                joinpath(examples_dir(), "structured_1d_dgsem", "elixir_euler_sedov.jl"),
                joinpath(examples_dir(), "tree_1d_dgsem", "elixir_mhd_ec.jl"), 
                joinpath(examples_dir(), "tree_1d_dgsem", "elixir_navierstokes_convergence_walls_amr.jl"),
-               joinpath(examples_dir(), "tree_1d_dgsem", "elixir_shallowwater_well_balanced_nonperiodic.jl"),
+               joinpath(examples_dir(), "tree_1d_dgsem", "elixir_euler_quasi_1d_source_terms_dirichlet.jl"),
                # 2D
                joinpath(examples_dir(), "tree_2d_dgsem", "elixir_advection_extended.jl"),
                joinpath(examples_dir(), "tree_2d_dgsem", "elixir_advection_amr_nonperiodic.jl"),

docs/literate/src/files/behind_the_scenes_simulation_setup_plots/src/SemidiscretizationHyperbolic_structure_figure.jl

@@ -4,7 +4,7 @@ plot(Shape([(-2.3, 4.5), (2.35, 4.5), (2.35, 2.5), (-2.3, 2.5)]), linecolor = "b
      grid = false, xlim = (-2.4, 2.8), ylim = (-25, 5.5))
 annotate!(2.3, 3.5,
           ("SemidiscretizationHyperbolic(mesh, equations, initial_conditions, solver; source_terms,
-boundary_conditions, RealT, uEltype, initial_cache)          ", 10, :black, :right))
+boundary_conditions, RealT, uEltype)                               ", 10, :black, :right))
 annotate!(-2.3, 1.5,
           ("creates and returns SemidiscretizationHyperbolic object, initialized using a mesh, equations,
 initial_conditions, boundary_conditions, source_terms, solver and cache", 9, :black, :left))

docs/src/index.md

@@ -53,7 +53,7 @@ installation and postprocessing procedures. Its features include:
   * Linearized Euler and acoustic perturbation equations
   * Hyperbolic diffusion equations for elliptic problems
   * Lattice-Boltzmann equations (D2Q9 and D3Q27 schemes)
-  * Shallow water equations
+  * Shallow water equations via [TrixiShallowWater.jl](https://github.com/trixi-framework/TrixiShallowWater.jl)
   * Several scalar conservation laws (e.g., linear advection, Burgers' equation, LWR traffic flow)
 * Multi-physics simulations
   * [Self-gravitating gas dynamics](https://github.com/trixi-framework/paper-self-gravitating-gas-dynamics)

docs/src/overview.md

@@ -59,7 +59,7 @@ different features on different mesh types.
 | Weak form                                                    |          ✅         |             ✅            |               ✅              |          ✅          |               ✅            | [`VolumeIntegralWeakForm`](@ref)
 | Flux differencing                                            |          ✅         |             ✅            |               ✅              |          ✅          |               ✅            | [`VolumeIntegralFluxDifferencing`](@ref)
 | Shock capturing                                              |          ✅         |             ✅            |               ✅              |          ✅          |               ❌            | [`VolumeIntegralShockCapturingHG`](@ref)
-| Nonconservative equations                                    |          ✅         |             ✅            |               ✅              |          ✅          |               ✅            | e.g., GLM MHD or shallow water equations
+| Nonconservative equations                                    |          ✅         |             ✅            |               ✅              |          ✅          |               ✅            | e.g., [`IdealGlmMhdEquations2D`](@ref)
 | Parabolic terms                                              |          ✅         |             ❌            |               ❌              |          ✅          |               ✅            | e.g., [`CompressibleNavierStokesDiffusion2D`](@ref)
 
 ᵃ: quad = quadrilateral, hex = hexahedron