Merge branch 'trustyai-explainability:main' into main

Author: saichandrapandraju

.flake8

@@ -0,0 +1,27 @@
+[flake8]
+# UFN plugin must be run in serial
+jobs = 0
+max-line-length = 120
+
+exclude =
+    doc,
+    .venv,
+    .git,
+    .yml,
+    Pipfile.*,
+    docs/*,
+
+fcn_exclude_functions =
+    re,
+    logging,
+    LOGGER,
+    os,
+    json,
+    yaml,
+    pytest,
+
+enable-extensions =
+    FCN,
+    UFN,
+    NIC,
+    NIT,

.gitignore

@@ -159,7 +159,7 @@ cython_debug/
 #  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
 #  and can be added to the global gitignore or merged into this file.  For a more nuclear
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
+.idea/
 .idea/.gitignore
 .idea/misc.xml
 .idea/modules.xml

.pre-commit-config.yaml

@@ -0,0 +1,53 @@
+minimum_pre_commit_version: 3.3.0
+default_install_hook_types: [pre-commit, commit-msg]
+
+default_language_version:
+  python: python3
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: "v5.0.0"
+    hooks:
+      - id: check-merge-conflict
+      - id: debug-statements
+      - id: trailing-whitespace
+        args: [--markdown-linebreak-ext=md] # Do not process Markdown files.
+      - id: end-of-file-fixer
+      - id: check-ast
+      - id: check-builtin-literals
+      - id: check-docstring-first
+      - id: check-toml
+
+  - repo: https://github.com/PyCQA/flake8
+    rev: "7.1.2"
+    hooks:
+      - id: flake8
+        args: [--config=.flake8, '--ignore=FCN001,W503']
+        additional_dependencies:
+          [
+            "git+https://github.com/RedHatQE/[email protected]",
+            "flake8-mutable",
+          ]
+
+  - repo: https://github.com/Yelp/detect-secrets
+    rev: v1.5.0
+    hooks:
+      - id: detect-secrets
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.9.10
+    hooks:
+      - id: ruff
+      - id: ruff-format
+
+  - repo: https://github.com/gitleaks/gitleaks
+    rev: v8.24.0
+    hooks:
+      - id: gitleaks
+
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.15.0
+    hooks:
+      - id: mypy
+        additional_dependencies: ["types-PyYAML", "types-requests"]
+        exclude: ^(docs/|.*/test_.*)

CONTRIBUTING.md

@@ -0,0 +1,31 @@
+# New contributor guide
+
+## Installation
+
+TrustyAIService uses `uv` as a package manager. To install it, follow the official [installation guide](https://github.com/astral-sh/uv).
+
+First, create a virtual environment:
+```bash
+uv venv
+source .venv/bin/activate
+```
+
+Then install the project dependencies into your virtual environment:
+```bash
+uv pip install -e .
+```
+
+## pre-commit
+
+In order to ensure proper and consistent code formatting, we use `pre-commit` in combination with tools like `ruff`, `flake8`, and `mypy`. When committing your code, make sure that all the pre-commit checks pass in your local environment.
+To install pre-commit:
+
+```bash
+pre-commit install -t pre-commit -t commit-msg
+```
+
+Run manually pre-commit:
+
+```bash
+pre-commit run --all-files
+```

Dockerfile

@@ -6,13 +6,13 @@ WORKDIR /app
 
 COPY pyproject.toml poetry.lock* ./
 
-RUN pip install poetry==1.6.1
-
-RUN poetry export -f requirements.txt --without dev > requirements.txt && \
+USER root
+RUN pip install poetry==1.6.1 && \
+    poetry export -f requirements.txt --without dev > requirements.txt && \
     pip install --no-cache-dir -r requirements.txt
-
 COPY . .
+USER 1001
+EXPOSE 4443
 
-EXPOSE 8080
-
-CMD ["uvicorn", "src.main:app", "--host", "0.0.0.0", "--port", "8080"]
+#CMD ["uvicorn", "src.main:app", "--host", "0.0.0.0", "--port", "4443", "--ssl-keyfile", "/etc/tls/internal/tls.key", "--ssl-certfile", "/etc/tls/internal/tls.crt", "--log-level", "trace"]
+CMD ["uvicorn", "src.main:app", "--host", "0.0.0.0", "--port", "4443", "--ssl-keyfile", "/etc/tls/internal/tls.key", "--ssl-certfile", "/etc/tls/internal/tls.crt"]

poetry.lock

@@ -1,38 +1,44 @@
-[tool.poetry]
+[project]
 name = "trustyai-service"
 version = "1.0.0rc0"
 description = "TrustyAI Service"
-authors = ["Rui Vieira", "TrustyAI team"]
+authors = [
+    { name = "Rui Vieira" },
+    { name = "TrustyAI team" },
+]
+requires-python = "~=3.11"
 readme = "README.md"
-packages = [{include = "src"}]
-
-[tool.poetry.dependencies]
-python = "^3.11"
-fastapi = "^0.115.9"
-pandas = "^2.2.3"
-prometheus-client = "^0.21.1"
-pydantic = "^2.4.2"
-uvicorn = "^0.34.0"
-protobuf = "^4.24.4"
-requests = "^2.31.0"
-
-[tool.poetry.group.dev.dependencies]
-pytest = "^7.4.2"
-black = "^23.9.1"
-isort = "^5.12.0"
-flake8 = "^6.1.0"
-mypy = "^1.5.1"
-pytest-cov = "^4.1.0"
-httpx = "^0.25.0"
+dependencies = [
+    "fastapi>=0.115.9,<0.116",
+    "pandas>=2.2.3,<3",
+    "prometheus-client>=0.21.1,<0.22",
+    "pydantic>=2.4.2,<3",
+    "uvicorn>=0.34.0,<0.35",
+    "protobuf>=4.24.4,<5",
+    "requests>=2.31.0,<3",
+    "cryptography>=44.0.2,<45",
+    "h5py>=3.13.0,<4",
+]
 
-[build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
+[dependency-groups]
+dev = [
+    "pytest>=7.4.2,<8",
+    "isort>=5.12.0,<6",
+    "flake8>=6.1.0,<7",
+    "mypy>=1.5.1,<2",
+    "pytest-cov>=4.1.0,<5",
+    "httpx>=0.25.0,<0.26",
+]
+
+[tool.hatch.build.targets.sdist]
+include = ["src"]
+
+[tool.hatch.build.targets.wheel]
+include = ["src"]
 
-[tool.black]
-line-length = 88
-target-version = ["py311"]
-include = '\.pyi?$'
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
 [tool.isort]
 profile = "black"
@@ -44,8 +50,22 @@ warn_return_any = true
 warn_unused_configs = true
 disallow_untyped_defs = true
 disallow_incomplete_defs = true
+check_untyped_defs = true
+no_implicit_optional = true
+show_error_codes = true
+warn_unused_ignores = true
+
+[tool.ruff]
+preview = true
+line-length = 120
+fix = true
+output-format = "grouped"
+extend-exclude = ["utilities/manifests"]
+
+[tool.ruff.format]
+exclude = [".git", ".venv", ".mypy_cache", "__pycache__"]
 
 [tool.pytest.ini_options]
 testpaths = ["tests"]
 python_files = "test_*.py"
-python_functions = "test_*" 
+python_functions = "test_*"