Update deps

Author: benjeffery

requirements/CI-complete/requirements.txt

@@ -1,12 +1,12 @@
 bintrees==2.2.0
 daiquiri==3.3.0
 demes==0.2.3
-mypy==1.15.0
+mypy==1.17.0
 newick==1.10.0
-pytest==8.3.5
-pytest-cov==6.0.0
-pytest-xdist==3.6.1
+pytest==8.4.1
+pytest-cov==6.2.1
+pytest-xdist==3.8.0
 python_jsonschema_objects==0.5.7
-scipy==1.14.0
-tskit==0.6.0
+scipy==1.15.3
+tskit==0.6.4
 kastore==0.3.3

requirements/CI-docs/requirements.txt

@@ -2,11 +2,12 @@ daiquiri==3.3.0
 demes==0.2.3
 demesdraw==0.4.0
 jupyter-book==1.0.4.post1
-networkx==3.4.2
-matplotlib==3.10.1
+networkx==3.5
+matplotlib==3.10.3
 newick==1.10.0
+setuptools==80.9.0
 sphinx-argparse==0.5.2
 sphinx-book-theme # not pinned to enable easy updates
-sphinx-issues==5.0.0
-tskit==0.6.0
-scipy==1.15.2
+sphinx-issues==5.0.1
+tskit==0.6.4
+scipy==1.16.1

requirements/CI-tests-pip/requirements.txt

@@ -1,9 +1,11 @@
 bintrees==2.2.0
-daiquiri==3.2.5.1
+daiquiri==3.2.5.1; python_version<="3.9"
+daiquiri==3.3.0; python_version>"3.9"
 kastore==0.3.3
 newick==1.10.0
-pytest==8.3.5
-pytest-xdist==3.6.1
+pytest==8.4.1
+pytest-xdist==3.8.0
 python_jsonschema_objects==0.5.7
-scipy==1.13.1
-tskit==0.6.0
+scipy==1.13.1; python_version<="3.9"
+scipy==1.16.1; python_version>"3.9"
+tskit==0.6.4