1
+ alabaster == 0.7.13
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+ anyio == 3.6.2
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+ argon2-cffi == 21.3.0
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+ argon2-cffi-bindings == 21.2.0
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+ arrow == 1.2.3
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+ asciitree == 0.3.3
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+ asttokens == 2.2.1
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+ attrs == 21.4.0
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+ Babel == 2.11.0
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+ backcall == 0.2.0
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+ beautifulsoup4 == 4.11.1
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+ bleach == 5.0.1
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+ certifi == 2022.12.7
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+ cffi == 1.15.1
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+ charset-normalizer == 3.0.1
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+ click == 8.1.3
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+ cloudpickle == 2.2.1
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+ colorama == 0.4.6
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+ coloredlogs == 15.0.1
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+ comm == 0.1.2
1
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cyvcf2 == 0.30.18
2
- daiquiri == 3.0.1
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+ daiquiri == 3.2.1
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+ dask == 2022.1.0
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+ debugpy == 1.6.5
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+ decorator == 5.1.1
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+ defusedxml == 0.7.1
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+ demes == 0.2.2
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+ docutils == 0.17.1
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+ entrypoints == 0.4
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+ executing == 1.2.0
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+ fasteners == 0.18
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+ fastjsonschema == 2.16.2
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+ fqdn == 1.5.1
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+ fsspec == 2023.1.0
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+ gitdb == 4.0.10
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+ GitPython == 3.1.30
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+ greenlet == 2.0.1
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+ humanfriendly == 10.0
3
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humanize == 4.4.0
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+ idna == 3.4
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+ imagesize == 1.4.1
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+ importlib-metadata == 6.0.0
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+ ipykernel == 6.20.2
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+ ipython == 8.8.0
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+ ipython-genutils == 0.2.0
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+ ipywidgets == 7.7.2
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+ isoduration == 20.11.0
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+ jedi == 0.18.2
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+ Jinja2 == 3.1.2
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+ jsonpointer == 2.3
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+ jsonschema == 4.17.3
4
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jupyter-book == 0.13.1
5
- lmdb == 1.3.0
6
- msprime >= 1.1.1
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- numpy == 1.21.6 # Held at 1.21.6 for Python 3.7 compatibility
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- pandas == 1.2.4
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- sphinx-argparse == 0.3.1
10
- sphinx-issues == 1.2.0
53
+ jupyter-cache == 0.4.3
54
+ jupyter-events == 0.6.3
55
+ jupyter-server-mathjax == 0.2.6
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+ jupyter-sphinx == 0.3.2
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+ jupyter_client == 7.4.9
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+ jupyter_core == 5.1.3
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+ jupyter_server == 2.1.0
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+ jupyter_server_terminals == 0.4.4
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+ jupyterlab-pygments == 0.2.2
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+ jupyterlab-widgets == 1.1.1
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+ latexcodec == 2.0.1
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+ linkify-it-py == 1.0.3
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+ lmdb == 1.4.0
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+ locket == 1.0.0
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+ lxml == 4.9.2
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+ markdown-it-py == 1.1.0
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+ MarkupSafe == 2.1.2
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+ matplotlib-inline == 0.1.6
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+ mdit-py-plugins == 0.2.8
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+ mistune == 0.8.4
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+ msprime == 1.2.0
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+ myst-nb == 0.13.2
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+ myst-parser == 0.15.2
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+ nbclassic == 0.4.8
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+ nbclient == 0.5.13
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+ nbconvert == 6.5.4
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+ nbdime == 3.1.1
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+ nbformat == 5.7.3
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+ nest-asyncio == 1.5.6
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+ newick == 1.6.0
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+ notebook == 6.5.2
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+ notebook_shim == 0.2.2
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+ numcodecs == 0.11.0
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+ numpy == 1.24.1
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+ packaging == 23.0
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+ pandas == 1.5.3
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+ pandocfilters == 1.5.0
90
+ parso == 0.8.3
91
+ partd == 1.3.0
92
+ pexpect == 4.8.0
93
+ pickleshare == 0.7.5
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+ platformdirs == 2.6.2
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+ prometheus-client == 0.15.0
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+ prompt-toolkit == 3.0.36
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+ psutil == 5.9.4
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+ ptyprocess == 0.7.0
99
+ pure-eval == 0.2.2
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+ pybtex == 0.24.0
101
+ pybtex-docutils == 1.0.2
102
+ pycparser == 2.21
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+ pydata-sphinx-theme == 0.8.1
104
+ Pygments == 2.14.0
105
+ pyrsistent == 0.19.3
106
+ python-dateutil == 2.8.2
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+ python-json-logger == 2.0.4
108
+ pytz == 2022.7.1
109
+ PyYAML == 6.0
110
+ pyzmq == 25.0.0
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+ requests == 2.28.2
112
+ rfc3339-validator == 0.1.4
113
+ rfc3986-validator == 0.1.1
114
+ ruamel.yaml == 0.17.21
115
+ ruamel.yaml.clib == 0.2.7
116
+ Send2Trash == 1.8.0
117
+ six == 1.16.0
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+ smmap == 5.0.0
119
+ sniffio == 1.3.0
120
+ snowballstemmer == 2.2.0
11
121
sortedcontainers == 2.4.0
12
- tskit == 0.5.3
122
+ soupsieve == 2.3.2.post1
123
+ Sphinx == 4.5.0
124
+ sphinx-argparse == 0.4.0
125
+ sphinx-book-theme == 0.3.3
126
+ sphinx-comments == 0.0.3
127
+ sphinx-copybutton == 0.5.1
128
+ sphinx-external-toc == 0.2.4
129
+ sphinx-issues == 3.0.1
130
+ sphinx-jupyterbook-latex == 0.4.7
131
+ sphinx-multitoc-numbering == 0.1.3
132
+ sphinx-thebe == 0.1.2
133
+ sphinx-togglebutton == 0.3.2
134
+ sphinx_design == 0.1.0
135
+ sphinxcontrib-bibtex == 2.5.0
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+ sphinxcontrib-devhelp == 1.0.2
137
+ sphinxcontrib-htmlhelp == 2.0.0
138
+ sphinxcontrib-jsmath == 1.0.1
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+ sphinxcontrib-qthelp == 1.0.3
140
+ sphinxcontrib-serializinghtml == 1.1.5
141
+ sphinxcontrib.applehelp == 1.0.3
142
+ SQLAlchemy == 1.4.46
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+ stack-data == 0.6.2
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+ svgwrite == 1.4.3
145
+ terminado == 0.17.1
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+ tinycss2 == 1.2.1
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+ toolz == 0.12.0
148
+ tornado == 6.2
149
+ tqdm == 4.64.1
150
+ traitlets == 5.8.1
151
+ tskit == 0.5.4
13
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tskit-book-theme == 0.3.2
14
- tqdm == 4.64.0
15
- zarr == 2.11.3
16
- jsonschema [format-nongpl ]== 4.17.3
153
+ uc-micro-py == 1.0.1
154
+ uri-template == 1.2.0
155
+ urllib3 == 1.26.14
156
+ wcwidth == 0.2.6
157
+ webcolors == 1.12
158
+ webencodings == 0.5.1
159
+ websocket-client == 1.4.2
160
+ widgetsnbextension == 3.6.1
161
+ zarr == 2.13.6
162
+ zipp == 3.11.0
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