Merge pull request #801 from benjeffery/release-prep-python

0.3.0 release prep

Author: benjeffery

c/CHANGELOG.rst

@@ -5,6 +5,7 @@
 **Breaking changes**
 
 - The macro ``TSK_IMPUTE_MISSING_DATA`` is renamed to ``TSK_ISOLATED_NOT_MISSING``
+  (:user:`benjeffery`, :issue:`716`, :pr:`794`)  
 
 **New features**
 

c/tskit/core.h

@@ -128,7 +128,7 @@ to the API or ABI are introduced, i.e., the addition of a new function.
 The library patch version. Incremented when any changes not relevant to the
 to the API or ABI are introduced, i.e., internal refactors of bugfixes.
 */
-#define TSK_VERSION_PATCH   4
+#define TSK_VERSION_PATCH   5
 /** @} */
 
 /* Node flags */

python/CHANGELOG.rst

@@ -1,5 +1,5 @@
 --------------------
-[0.3.0] - 2020-07-29
+[0.3.0] - 2020-08-27
 --------------------
 
 Major feature release for metadata schemas, set-like operations, mutation times,
@@ -30,7 +30,7 @@ SVG drawing improvements and many others.
 - The arguments to ``TreeSequence.genotype_matrix``, ``TreeSequence.haplotypes``
   and ``TreeSequence.variants`` must now be keyword arguments, not positional. This
   is to support the change from ``impute_missing_data`` to ``isolated_as_missing``
-  in the arguments to these methods
+  in the arguments to these methods. (:user:`benjeffery`, :issue:`716`, :pr:`794`)
 
 **New features**
 
@@ -150,6 +150,7 @@ SVG drawing improvements and many others.
   and ``TreeSequence.variants`` the ``impute_missing_data`` argument is deprecated
   and replaced with ``isolated_as_missing``. Note that to get the same behaviour
   ``impute_missing_data=True`` should be replaced with ``isolated_as_missing=False``.
+  (:user:`benjeffery`, :issue:`716`, :pr:`794`)
 
 --------------------
 [0.2.3] - 2019-11-22

python/tests/test_lowlevel.py

@@ -2267,4 +2267,4 @@ def test_kastore_version(self):
 
     def test_tskit_version(self):
         version = _tskit.get_tskit_version()
-        self.assertEqual(version, (0, 99, 4))
+        self.assertEqual(version, (0, 99, 5))

python/tskit/_version.py

@@ -1,4 +1,4 @@
 # Definitive location for the version number.
 # During development, should be x.y.z.devN
 # For beta should be x.y.zbN
-tskit_version = "0.3.0b2"
+tskit_version = "0.3.0"