Merge pull request #413 from hyanwong/temporarily-undocument-fasta

Suppress mention of FASTA in docs

Author: jeromekelleher

python/tskit/cli.py

@@ -189,7 +189,9 @@ def get_tskit_parser():
 
     parser = subparsers.add_parser(
         "fasta",
-        help="Convert the tree sequence haplotypes to fasta format")
+        # help="Convert the tree sequence haplotypes to fasta format")
+        # suppress fasta visibility pending https://github.com/tskit-dev/tskit/issues/353
+        help=argparse.SUPPRESS)
     add_tree_sequence_argument(parser)
     parser.add_argument(
         "--wrap", "-w", type=int, default=60,

python/tskit/trees.py

@@ -3046,6 +3046,8 @@ def samples(self, population=None, population_id=None):
         return samples
 
     def write_fasta(self, output, sequence_ids=None, wrap_width=60):
+        ""
+        # suppress fasta visibility pending https://github.com/tskit-dev/tskit/issues/353
         """
         Writes haplotype data for samples in FASTA format to the
         specified file-like object.