Merge pull request #40 from jeromekelleher/more-ci

Initial appveyor config.

Author: jeromekelleher

.travis.yml

@@ -0,0 +1,57 @@
+cache:
+  pip: true
+  directories:
+    - $HOME/.cache/pip
+    - $HOME/.local
+
+language: python
+
+matrix:
+  include:
+    - os: linux
+      python: 2.7
+    - os: linux
+      python: 3.5
+    - os: linux
+      python: 3.6
+    - os: osx
+      language: generic
+
+install:
+  - echo "DISABLED"
+
+script:
+  - echo "DISABLED"
+
+# FIXME giving up here also until an installable version of msprime is available
+# on conda. The GSL dependency is too hard otherwise.
+#
+# install:
+#   # We do this conditionally because it saves us some downloading if the
+#   # version is the same.
+#   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
+#       curl https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh > miniconda.sh;
+#       export TRAVIS_PYTHON_VERSION="3.6";
+#     elif [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
+#       wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
+#     else
+#       wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+#     fi
+#   - bash miniconda.sh -b -p $HOME/miniconda
+#   - export PATH="$HOME/miniconda/bin:$PATH"
+#   - hash -r
+#   - conda config --set always_yes yes --set changeps1 no
+#   - conda config --add channels conda-forge
+#   - conda update -q conda
+#   - conda info -a
+#   - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
+#   - source activate test-environment
+#   - conda install --yes --file=python/requirements/conda-minimal.txt
+#   - conda install -c bioconda --yes pysam
+#   - pip install -r python/requirements/development.txt
+#   # Need to install in 'edit' mode, as pip can't find the header files otherwise.
+#   # No idea why.
+#   - pip install -e python/
+
+# script:
+#   - nosetests -vs python/tests

appveyor.yml

@@ -0,0 +1,40 @@
+environment:
+  matrix:
+    # Disabling Py36 x64. Some weird problem with h5py. See github.com/tskit-dev/msprime/issues/678
+    # - PYTHON: "C:\\Miniconda36-x64"
+    # - PYTHON: "C:\\Miniconda37"
+    # Disabling Py37. See https://github.com/tskit-dev/msprime/issues/653
+    #- PYTHON: "C:\\Miniconda37-x64"
+    - PYTHON: "C:\\Miniconda36"
+
+install:
+  - "SET PATH=%PYTHON%;%PYTHON%\\Scripts;%PATH%"
+
+build: false
+
+# test_script:
+#   # We have symlinks in the repo, which need to be treated specially on Windows.
+#   - "git config core.symlinks true"
+#   - "git reset --hard"
+#   - "conda config --add channels conda-forge"
+#   - "conda install --yes --file=python/requirements/conda-minimal.txt"
+#   - "pip install kastore"  
+#   - "pip install PyVCF"  
+#   - "pip install newick"  
+#   - "pip install python_jsonschema_objects"
+
+# FIXME: giving up until we have an installable version of msprime from Conda.
+# It's too tricky to manage the GSL dependency otherwise.
+#
+#   # TODO: remove when we have an installable version of msprime 0.7.x
+#   - "pip install --pre tskit"
+#   - "conda install --yes gsl"
+#   - "SET MSP_CONDA_PREFIX=%PYTHON%"
+#   - "pip install --user git+https://github.com/tskit-dev/msprime"
+
+#   - "cd python"
+#   - "python setup.py build_ext --inplace"
+#   - "nosetests -vs"
+
+# after_test:
+#   - "python setup.py bdist_wheel"

python/requirements/conda-minimal.txt

@@ -0,0 +1,6 @@
+numpy
+nose
+h5py
+six
+jsonschema
+svgwrite

python/requirements/development.txt

@@ -7,21 +7,12 @@ newick
 nose
 numpy
 six
-kastore>=0.2.2
+kastore
 jsonschema
 sphinx
 sphinx-argparse
 sphinx_rtd_theme
 svgwrite
-# Seems to be a problem with Python 3. svgwrite imports
-# pyparsing.
-pyparsing < 2.1
-
-# We need pysam and PyVCF for testing VCF output.
-# Pin pysam at 0.9 version as there are problems with building py33 version
-# on travis.
-pysam==0.9.1.4
+pyparsing 
+pysam
 PyVCF
-
-# We use JSON-schema to test out metadata handling.
-python_jsonschema_objects