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Merge pull request #433 from jeromekelleher/final-readthrough5
Final readthrough5
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paper.tex

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@@ -335,8 +335,8 @@ \section{Genome ARGs}
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How nodes are interpreted, exactly, is application dependent.
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Following \citet{hudson1983properties}, we can view nodes
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as representing gametes, or we can imagine them representing
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the genomes present in cells immediately before or after
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as representing gametes, or we can imagine them representing,
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for example, the genomes present in cells immediately before or after
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some instantaneous event (Appendix~\ref{sec-cell-lineages-and-args}).
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A node can represent any genome along a chain of cell divisions
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or can be interpreted as representing one of the genomes of a
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% minimally simplified gARG.
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The schematic illustrates an important point about the biological reality of polytomies.
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Three linages coalesce in the left-hand genome of individual $D_{10}$, but do
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Three lineages coalesce in the left-hand genome of individual $D_{10}$, but do
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so as the result of two successive bifurcations. This is \emph{necessarily} so,
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because the only known method of reproducing DNA is by (semi-conservative) duplication.
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Whether this polytomy is resolvable depends on the available mutational data.

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