DESCRIPTION

Package: RNAseqNet
Type: Package
Title: Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation
Version: 0.1.4
Date: 2020-06-08
Authors@R: c(person("Alyssa", "Imbert", role = c("aut"), email="alyssa.imbert@gmail.com"),
             person("Nathalie", "Vialaneix", role = c("aut", "cre"), email="nathalie.vialaneix@inrae.fr"))
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Description: Infer log-linear Poisson Graphical Model with an auxiliary data
    set. Hot-deck multiple imputation method is used to improve the reliability
    of the inference with an auxiliary dataset. Standard log-linear Poisson 
    graphical model can also be used for the inference and the Stability 
    Approach for Regularization Selection (StARS) is implemented to drive the 
    selection of the regularization parameter. The method is fully described in
    <doi:10.1093/bioinformatics/btx819>.
License: GPL (>= 3)
Repository: CRAN
Depends:
    R (>= 3.1.0), ggplot2
Imports:
    igraph (>= 1.0),
    hot.deck,
    PoiClaClu,
    glmnet,
    methods,
    utils
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0