Skip to content

Commit 7f90ed0

Browse files
khayamAminkhayamAmin
committed
Updated re-generated docs
1 parent f501e00 commit 7f90ed0

File tree

45 files changed

+117
-674
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

45 files changed

+117
-674
lines changed

‎docs/transformation-documentation/DrugExposure_dose_unit_source_value.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -35,18 +35,7 @@ The UNIT OF MEASUREMENT used for each Systemic Anti-Cancer Therapy Drug Administ
3535
lower(Drug_Name) as Drug_Name,
3636
Actual_Dose_Per_Administration,
3737
Administration_Measurement_Per_Actual_Dose,
38-
CASE
39-
-- yyyy-MM-dd format
40-
WHEN Administration_Date LIKE '____-__-__'
41-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
42-
-- dd/MM/yyyy format, where day is between 1 and 31
43-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
44-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
45-
-- Otherwise assume MM/dd/yyyy format
46-
WHEN Administration_Date LIKE '__/__/____'
47-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
48-
ELSE NULL
49-
END AS Administration_Date
38+
Administration_Date
5039
from omop_staging.sact_staging
5140

5241
```

‎docs/transformation-documentation/DrugExposure_drug_exposure_end_date.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -20,18 +20,7 @@ Converts text to dates.
2020
lower(Drug_Name) as Drug_Name,
2121
Actual_Dose_Per_Administration,
2222
Administration_Measurement_Per_Actual_Dose,
23-
CASE
24-
-- yyyy-MM-dd format
25-
WHEN Administration_Date LIKE '____-__-__'
26-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
27-
-- dd/MM/yyyy format, where day is between 1 and 31
28-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
29-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
30-
-- Otherwise assume MM/dd/yyyy format
31-
WHEN Administration_Date LIKE '__/__/____'
32-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
33-
ELSE NULL
34-
END AS Administration_Date
23+
Administration_Date
3524
from omop_staging.sact_staging
3625

3726
```

‎docs/transformation-documentation/DrugExposure_drug_exposure_start_date.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -20,18 +20,7 @@ Converts text to dates.
2020
lower(Drug_Name) as Drug_Name,
2121
Actual_Dose_Per_Administration,
2222
Administration_Measurement_Per_Actual_Dose,
23-
CASE
24-
-- yyyy-MM-dd format
25-
WHEN Administration_Date LIKE '____-__-__'
26-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
27-
-- dd/MM/yyyy format, where day is between 1 and 31
28-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
29-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
30-
-- Otherwise assume MM/dd/yyyy format
31-
WHEN Administration_Date LIKE '__/__/____'
32-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
33-
ELSE NULL
34-
END AS Administration_Date
23+
Administration_Date
3524
from omop_staging.sact_staging
3625

3726
```

‎docs/transformation-documentation/DrugExposure_drug_source_concept_id.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -332,18 +332,7 @@ Notes
332332
lower(Drug_Name) as Drug_Name,
333333
Actual_Dose_Per_Administration,
334334
Administration_Measurement_Per_Actual_Dose,
335-
CASE
336-
-- yyyy-MM-dd format
337-
WHEN Administration_Date LIKE '____-__-__'
338-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
339-
-- dd/MM/yyyy format, where day is between 1 and 31
340-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
341-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
342-
-- Otherwise assume MM/dd/yyyy format
343-
WHEN Administration_Date LIKE '__/__/____'
344-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
345-
ELSE NULL
346-
END AS Administration_Date
335+
Administration_Date
347336
from omop_staging.sact_staging
348337

349338
```

‎docs/transformation-documentation/DrugExposure_drug_source_value.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -19,18 +19,7 @@ has_toc: false
1919
lower(Drug_Name) as Drug_Name,
2020
Actual_Dose_Per_Administration,
2121
Administration_Measurement_Per_Actual_Dose,
22-
CASE
23-
-- yyyy-MM-dd format
24-
WHEN Administration_Date LIKE '____-__-__'
25-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
26-
-- dd/MM/yyyy format, where day is between 1 and 31
27-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
28-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
29-
-- Otherwise assume MM/dd/yyyy format
30-
WHEN Administration_Date LIKE '__/__/____'
31-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
32-
ELSE NULL
33-
END AS Administration_Date
22+
Administration_Date
3423
from omop_staging.sact_staging
3524

3625
```

‎docs/transformation-documentation/DrugExposure_nhs_number.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -19,18 +19,7 @@ has_toc: false
1919
lower(Drug_Name) as Drug_Name,
2020
Actual_Dose_Per_Administration,
2121
Administration_Measurement_Per_Actual_Dose,
22-
CASE
23-
-- yyyy-MM-dd format
24-
WHEN Administration_Date LIKE '____-__-__'
25-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
26-
-- dd/MM/yyyy format, where day is between 1 and 31
27-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
28-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
29-
-- Otherwise assume MM/dd/yyyy format
30-
WHEN Administration_Date LIKE '__/__/____'
31-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
32-
ELSE NULL
33-
END AS Administration_Date
22+
Administration_Date
3423
from omop_staging.sact_staging
3524

3625
```

‎docs/transformation-documentation/DrugExposure_quantity.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -20,18 +20,7 @@ Converts text to floating-point numbers.
2020
lower(Drug_Name) as Drug_Name,
2121
Actual_Dose_Per_Administration,
2222
Administration_Measurement_Per_Actual_Dose,
23-
CASE
24-
-- yyyy-MM-dd format
25-
WHEN Administration_Date LIKE '____-__-__'
26-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
27-
-- dd/MM/yyyy format, where day is between 1 and 31
28-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
29-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
30-
-- Otherwise assume MM/dd/yyyy format
31-
WHEN Administration_Date LIKE '__/__/____'
32-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
33-
ELSE NULL
34-
END AS Administration_Date
23+
Administration_Date
3524
from omop_staging.sact_staging
3625

3726
```

‎docs/transformation-documentation/DrugExposure_sig.md‎

Lines changed: 1 addition & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -19,18 +19,7 @@ has_toc: false
1919
lower(Drug_Name) as Drug_Name,
2020
Actual_Dose_Per_Administration,
2121
Administration_Measurement_Per_Actual_Dose,
22-
CASE
23-
-- yyyy-MM-dd format
24-
WHEN Administration_Date LIKE '____-__-__'
25-
THEN CAST(strptime(Administration_Date, '%Y-%m-%d') AS TIMESTAMP)
26-
-- dd/MM/yyyy format, where day is between 1 and 31
27-
WHEN Administration_Date LIKE '__/__/____' AND CAST(substring(Administration_Date, 1, 2) AS INTEGER) BETWEEN 1 AND 31
28-
THEN CAST(strptime(Administration_Date, '%d/%m/%Y') AS TIMESTAMP)
29-
-- Otherwise assume MM/dd/yyyy format
30-
WHEN Administration_Date LIKE '__/__/____'
31-
THEN CAST(strptime(Administration_Date, '%m/%d/%Y') AS TIMESTAMP)
32-
ELSE NULL
33-
END AS Administration_Date
22+
Administration_Date
3423
from omop_staging.sact_staging
3524

3625
```

‎docs/transformation-documentation/Measurement_measurement_date.md‎

Lines changed: 3 additions & 36 deletions
Original file line numberDiff line numberDiff line change
@@ -110,18 +110,7 @@ Converts text to dates.
110110
select distinct
111111
NHS_Number,
112112
Weight_At_Start_Of_Regimen,
113-
CASE
114-
-- Check for yyyy-MM-dd format (contains dash and year first)
115-
WHEN Start_Date_Of_Regimen LIKE '____-__-__'
116-
THEN CAST(strptime(Start_Date_Of_Regimen, '%Y-%m-%d') AS TIMESTAMP)
117-
-- dd/MM/yyyy format, where day is between 1 and 31
118-
WHEN Start_Date_Of_Regimen LIKE '__/__/____' AND CAST(substring(Start_Date_Of_Regimen, 1, 2) AS INTEGER) BETWEEN 1 AND 31
119-
THEN CAST(strptime(Start_Date_Of_Regimen, '%d/%m/%Y') AS TIMESTAMP)
120-
-- Otherwise assume MM/dd/yyyy format
121-
WHEN Start_Date_Of_Regimen LIKE '__/__/____'
122-
THEN CAST(strptime(Start_Date_Of_Regimen, '%m/%d/%Y') AS TIMESTAMP)
123-
ELSE NULL
124-
END AS Start_Date_Of_Regimen
113+
Start_Date_Of_Regimen
125114
from omop_staging.sact_staging
126115

127116
```
@@ -138,18 +127,7 @@ Converts text to dates.
138127
select distinct
139128
NHS_Number,
140129
Weight_At_Start_Of_Cycle,
141-
CASE
142-
-- Check for yyyy-MM-dd format (contains dash and year first)
143-
WHEN Start_Date_Of_Cycle LIKE '____-__-__'
144-
THEN CAST(strptime(Start_Date_Of_Cycle, '%Y-%m-%d') AS TIMESTAMP)
145-
-- dd/MM/yyyy format, where day is between 1 and 31
146-
WHEN Start_Date_Of_Cycle LIKE '__/__/____' AND CAST(substring(Start_Date_Of_Cycle, 1, 2) AS INTEGER) BETWEEN 1 AND 31
147-
THEN CAST(strptime(Start_Date_Of_Cycle, '%d/%m/%Y') AS TIMESTAMP)
148-
-- Otherwise assume MM/dd/yyyy format
149-
WHEN Start_Date_Of_Cycle LIKE '__/__/____'
150-
THEN CAST(strptime(Start_Date_Of_Cycle, '%m/%d/%Y') AS TIMESTAMP)
151-
ELSE NULL
152-
END AS Start_Date_Of_Cycle
130+
Start_Date_Of_Cycle
153131
from omop_staging.sact_staging
154132

155133
```
@@ -166,18 +144,7 @@ Converts text to dates.
166144
select distinct
167145
NHS_Number,
168146
Height_At_Start_Of_Regimen,
169-
CASE
170-
-- Check for yyyy-MM-dd format (contains dash and year first)
171-
WHEN Start_Date_Of_Regimen LIKE '____-__-__'
172-
THEN CAST(strptime(Start_Date_Of_Regimen, '%Y-%m-%d') AS TIMESTAMP)
173-
-- dd/MM/yyyy format, where day is between 1 and 31
174-
WHEN Start_Date_Of_Regimen LIKE '__/__/____' AND CAST(substring(Start_Date_Of_Regimen, 1, 2) AS INTEGER) BETWEEN 1 AND 31
175-
THEN CAST(strptime(Start_Date_Of_Regimen, '%d/%m/%Y') AS TIMESTAMP)
176-
-- Otherwise assume MM/dd/yyyy format
177-
WHEN Start_Date_Of_Regimen LIKE '__/__/____'
178-
THEN CAST(strptime(Start_Date_Of_Regimen, '%m/%d/%Y') AS TIMESTAMP)
179-
ELSE NULL
180-
END AS Start_Date_Of_Regimen
147+
Start_Date_Of_Regimen
181148
from omop_staging.sact_staging
182149

183150
```

‎docs/transformation-documentation/Measurement_measurement_datetime.md‎

Lines changed: 3 additions & 36 deletions
Original file line numberDiff line numberDiff line change
@@ -114,18 +114,7 @@ Converts text to dates.
114114
select distinct
115115
NHS_Number,
116116
Weight_At_Start_Of_Regimen,
117-
CASE
118-
-- Check for yyyy-MM-dd format (contains dash and year first)
119-
WHEN Start_Date_Of_Regimen LIKE '____-__-__'
120-
THEN CAST(strptime(Start_Date_Of_Regimen, '%Y-%m-%d') AS TIMESTAMP)
121-
-- dd/MM/yyyy format, where day is between 1 and 31
122-
WHEN Start_Date_Of_Regimen LIKE '__/__/____' AND CAST(substring(Start_Date_Of_Regimen, 1, 2) AS INTEGER) BETWEEN 1 AND 31
123-
THEN CAST(strptime(Start_Date_Of_Regimen, '%d/%m/%Y') AS TIMESTAMP)
124-
-- Otherwise assume MM/dd/yyyy format
125-
WHEN Start_Date_Of_Regimen LIKE '__/__/____'
126-
THEN CAST(strptime(Start_Date_Of_Regimen, '%m/%d/%Y') AS TIMESTAMP)
127-
ELSE NULL
128-
END AS Start_Date_Of_Regimen
117+
Start_Date_Of_Regimen
129118
from omop_staging.sact_staging
130119

131120
```
@@ -142,18 +131,7 @@ Converts text to dates.
142131
select distinct
143132
NHS_Number,
144133
Weight_At_Start_Of_Cycle,
145-
CASE
146-
-- Check for yyyy-MM-dd format (contains dash and year first)
147-
WHEN Start_Date_Of_Cycle LIKE '____-__-__'
148-
THEN CAST(strptime(Start_Date_Of_Cycle, '%Y-%m-%d') AS TIMESTAMP)
149-
-- dd/MM/yyyy format, where day is between 1 and 31
150-
WHEN Start_Date_Of_Cycle LIKE '__/__/____' AND CAST(substring(Start_Date_Of_Cycle, 1, 2) AS INTEGER) BETWEEN 1 AND 31
151-
THEN CAST(strptime(Start_Date_Of_Cycle, '%d/%m/%Y') AS TIMESTAMP)
152-
-- Otherwise assume MM/dd/yyyy format
153-
WHEN Start_Date_Of_Cycle LIKE '__/__/____'
154-
THEN CAST(strptime(Start_Date_Of_Cycle, '%m/%d/%Y') AS TIMESTAMP)
155-
ELSE NULL
156-
END AS Start_Date_Of_Cycle
134+
Start_Date_Of_Cycle
157135
from omop_staging.sact_staging
158136

159137
```
@@ -170,18 +148,7 @@ Converts text to dates.
170148
select distinct
171149
NHS_Number,
172150
Height_At_Start_Of_Regimen,
173-
CASE
174-
-- Check for yyyy-MM-dd format (contains dash and year first)
175-
WHEN Start_Date_Of_Regimen LIKE '____-__-__'
176-
THEN CAST(strptime(Start_Date_Of_Regimen, '%Y-%m-%d') AS TIMESTAMP)
177-
-- dd/MM/yyyy format, where day is between 1 and 31
178-
WHEN Start_Date_Of_Regimen LIKE '__/__/____' AND CAST(substring(Start_Date_Of_Regimen, 1, 2) AS INTEGER) BETWEEN 1 AND 31
179-
THEN CAST(strptime(Start_Date_Of_Regimen, '%d/%m/%Y') AS TIMESTAMP)
180-
-- Otherwise assume MM/dd/yyyy format
181-
WHEN Start_Date_Of_Regimen LIKE '__/__/____'
182-
THEN CAST(strptime(Start_Date_Of_Regimen, '%m/%d/%Y') AS TIMESTAMP)
183-
ELSE NULL
184-
END AS Start_Date_Of_Regimen
151+
Start_Date_Of_Regimen
185152
from omop_staging.sact_staging
186153

187154
```

0 commit comments

Comments
 (0)