Commit 452ced7
Chore/cadc merge (#47)
* merge all changes back into master (#15)
* initial setup changes setting homepage and logo (#3)
* feat(gwasAppSetup): Initial commit (#5)
* feat(gwasAppSetup): Initial commit
* feat(gwasAppSetup): Fixed 508 issues
* feat(gwasAppSetup): Got storybook to work and added CI test
* feat(gwasAppSetup): Edited CI test to match Spike CI test
* Chore/update 0.10.78 (#6)
* Update/release 0 10 67 (#57)
* update version to v0.10.61
* update version to v0.10.67
* update version to v0.10.67
* Update ci.yaml
* update build to use start.sh for automation (#59)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update to 0.10.73 (#63)
* Chore/update docker (#64)
* update Dockerfile
* update .env files
* Chore/update 0.10.74 (#66)
* update Dockerfile
* update .env files
* update to gen3.2 0.10.74
* Added Loading.tsx component and integrated Suspense (#65)
* Added Loading.tsx component and integrated Suspense
* Moved Loading.tsx to components folder and updated _app.tsx
* update to 0.10.77 (#67)
* update to 0.10.78 (#68)
---------
Co-authored-by: Shawn O'Connor <ocshawn@ocshawn.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: Advaith Mahendrakar <120632885+AdvaithMahendrakar12@users.noreply.github.com>
* VADC-1644: add test support for RTKQuery (#8)
* add cohortAp and hooks
* add teamProjectHooks.ts
* setup jest
test storybook with rtkQuery hooks
* add test support for RTKQ
add teamProjectHooks.test
* clean up test
* clean up test
* add sharp
* add sharp
* update to 0.10.79
* revert CohortDefinitions
refactor test-utils
* add error to useProjectHooks
* remove hook story
* remove cohortApi to keep PR smaller
* Update vadc email (#10)
* Update navigation.json
all email references that currently are vadc@lists.uchicago.edu → change to vadc-support@gen3.org
* Update TeamProjectModal.tsx
all email references that currently are vadc@lists.uchicago.edu → change to vadc-support@gen3.org
* feat(resultsAppSetup): Commented out all JS files, deleted all CSS fi… (#11)
* feat(resultsAppSetup): Commented out all JS files, deleted all CSS files and modified
* feat(resultsAppSetup): renamed all .stories.jsx files to .oldStories.tsx
* feat(resultsAppSetup): created placeholder setup for app
* feat(resultsAppSetup): resolved ESLINT errors
* feat(resultsAppSetup): fixed compilation error
* feat(resultsAppSetup): updated files to avoid typescript errors
* feat(resultsAppSetup): changed placeholder variable so it doesn't render in UI
* VADC-1613: GWASUIApp: Phenotype Selection View (#13)
Port GWASUIApp: Add Phenotype Selection View for selecting Outcome Phenotype and Covariate Phenotype to new framework.
add lint-fix command to package json
* Chore/merge base fork (#14)
* Update/release 0 10 67 (#57)
* update version to v0.10.61
* update version to v0.10.67
* update version to v0.10.67
* Update ci.yaml
* update build to use start.sh for automation (#59)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update to 0.10.73 (#63)
* Chore/update docker (#64)
* update Dockerfile
* update .env files
* Chore/update 0.10.74 (#66)
* update Dockerfile
* update .env files
* update to gen3.2 0.10.74
* Added Loading.tsx component and integrated Suspense (#65)
* Added Loading.tsx component and integrated Suspense
* Moved Loading.tsx to components folder and updated _app.tsx
* update to 0.10.77 (#67)
* update to 0.10.78 (#68)
* update to 0.10.79 (#71)
add sharp
add testing support
* update to 0.10.80 (#73)
* add mantine theme that uses config colors (#76)
* add mantine theme that uses config colors
* run lint fix
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update to 0.10.81 (#77)
* try and fix build
* try and fix build
---------
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: Advaith Mahendrakar <120632885+AdvaithMahendrakar12@users.noreply.github.com>
* VADC-1646: cohort middleware api (#9)
* add tests for cohortApi
* add getSourceId query
* add more queries
* add more queries: histogram
* add all used queries
* add all used queries
* add sample data to nextJS API routes
* fix lint error
* remove comma
* VADC-1684: workflow api for the results app (#12)
* start of workflowApi
* add presigned URLs, monthly
* add api endpoints for development/testing
* add endpoint data and test
* update test typing
* add tests for presignedURLs
* ad test for fetch from presigned url returns 401
* add documentation
* fix name of cohortUtils.ts
* fix bad conflict resolution
---------
Co-authored-by: Shawn O'Connor <ocshawn@ocshawn.com>
* add missing login image (#7)
update first time use modal text
Co-authored-by: Shawn O'Connor <ocshawn@ocshawn.com>
---------
Co-authored-by: Jarvis <113449836+jarvisraymond-uchicago@users.noreply.github.com>
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: Advaith Mahendrakar <120632885+AdvaithMahendrakar12@users.noreply.github.com>
Co-authored-by: smvgarcia <111767892+smvgarcia@users.noreply.github.com>
* use old dockerfile (#16)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update dockerfile (#17)
* use old dockerfile
* update dockerfile
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* add ff path for qa (#18)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* add ff path for qa (#19)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fix basepath for images in next (#20)
* fix basepath for images in next
* fix docker loading config file
* fix loading of images that already have path added
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* bump gen3 version to 82 (#21)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* Vadc data commons integration (#23)
* update to eslint 9 (#78)
* cleanup navigation to point ot pages, update gen3 to 0.10.82, rename workspace config (#79)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* lock fix
---------
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fix build errors (#24)
* fix lint errors
* fix build errors
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* Fix/security (#25)
* fix spacing issues for precommit
* fix exeptions for precommit
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fix: package.json & package-lock.json to reduce vulnerabilities (#82)
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-JS-NEXT-9508709
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* update next dependencies to 15.2.4
* Update README.md (uc-cdis#84)
* update to @gen3/ff 0.10.85 (uc-cdis#85)
* upstream update (#26)
* update to eslint 9 (#78)
* cleanup navigation to point ot pages, update gen3 to 0.10.82, rename workspace config (#79)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fixs for precommit security check
* fix: package.json & package-lock.json to reduce vulnerabilities (#82)
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-JS-NEXT-9508709
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* update next dependencies to 15.2.4
* Update README.md (uc-cdis#84)
---------
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: cmlsn <100160785+cmlsn@users.noreply.github.com>
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* Chore/upstream update (#27)
* update to eslint 9 (#78)
* cleanup navigation to point ot pages, update gen3 to 0.10.82, rename workspace config (#79)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fixs for precommit security check
* fix: package.json & package-lock.json to reduce vulnerabilities (#82)
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-JS-NEXT-9508709
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* update next dependencies to 15.2.4
* Update README.md (uc-cdis#84)
* update to @gen3/ff 0.10.85 (uc-cdis#85)
---------
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: cmlsn <100160785+cmlsn@users.noreply.github.com>
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* Update README.md (uc-cdis#86)
add unrelated-histories information
* Fix docker start (uc-cdis#88)
* fix Docker not starting
* fix Docker not starting
* update env files (uc-cdis#89)
* VADC-1741: add atlas page (#28)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* Release 0.10.89 (uc-cdis#91)
* update to 0.10.89
* update to 0.10.89
* remove old config files/images
* update ContentDatabase
* npm cleanup and remove ff directory (#29)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update ContentDatabase paths (uc-cdis#93)
* Chore/fork sync (#30)
* update to eslint 9 (#78)
* cleanup navigation to point ot pages, update gen3 to 0.10.82, rename workspace config (#79)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fixs for precommit security check
* fix: package.json & package-lock.json to reduce vulnerabilities (#82)
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-JS-NEXT-9508709
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* update next dependencies to 15.2.4
* Update README.md (uc-cdis#84)
* update to @gen3/ff 0.10.85 (uc-cdis#85)
* Update README.md (uc-cdis#86)
add unrelated-histories information
* Fix docker start (uc-cdis#88)
* fix Docker not starting
* fix Docker not starting
* update env files (uc-cdis#89)
* Release 0.10.89 (uc-cdis#91)
* update to 0.10.89
* update to 0.10.89
* remove old config files/images
* update ContentDatabase
* update ContentDatabase paths (uc-cdis#93)
* overwrite dockerfile
q
:q
exit
help
end
* dockerfile fix
---------
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: cmlsn <100160785+cmlsn@users.noreply.github.com>
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* VADC-1740: update storybook (#32)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* Set up user permission for Apps on QA (#33)
* VADC-1755: setup permision for atlas
* VADC-1755: setup permision for Gen3 GWAS
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update apps config path (uc-cdis#94)
* add theme colors into safelist (uc-cdis#95)
* point atlas to correct url (#34)
* point atlas to correct url (#35)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fix env dev file (#36)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update to 0.10.91 (uc-cdis#96)
* atlas fix iframe url (#37)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* VADC-1670: Results App Page Setup (#38)
* fix version to 0.10.91 (uc-cdis#97)
* VADC-1761: change how user refresh is triggered (#39)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* update to 0.10.92 (uc-cdis#104)
* update Gen3 FF to 0.10.92 (#43)
* update to eslint 9 (#78)
* cleanup navigation to point ot pages, update gen3 to 0.10.82, rename workspace config (#79)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fixs for precommit security check
* fix: package.json & package-lock.json to reduce vulnerabilities (#82)
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-JS-NEXT-9508709
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* update next dependencies to 15.2.4
* Update README.md (uc-cdis#84)
* update to @gen3/ff 0.10.85 (uc-cdis#85)
* Update README.md (uc-cdis#86)
add unrelated-histories information
* Fix docker start (uc-cdis#88)
* fix Docker not starting
* fix Docker not starting
* update env files (uc-cdis#89)
* Release 0.10.89 (uc-cdis#91)
* update to 0.10.89
* update to 0.10.89
* remove old config files/images
* update ContentDatabase
* update ContentDatabase paths (uc-cdis#93)
* update apps config path (uc-cdis#94)
* add theme colors into safelist (uc-cdis#95)
* update to 0.10.91 (uc-cdis#96)
* fix version to 0.10.91 (uc-cdis#97)
* update to 0.10.92 (uc-cdis#104)
* fix syntax
* revert navigation
* remove duplicates/fix name
---------
Co-authored-by: Shawn O'Connor <ocshawn@ocshawn.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: cmlsn <100160785+cmlsn@users.noreply.github.com>
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* add dataLibrary config (#44)
* (VADC-1776): Update logo and text on home page (#49)
* VADC-1776: Update logo and text on home page
* add VA logo to footer
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* VADC-1776: Make VA logo smaller file (#50)
* Remove va footer logo (#52)
Remove va footer logo
* VADC-1781: update logo (#53)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* (CADC-1664): GWASResults: Hometable Initial Setup (#55)
* GWASResults: Hometable Initial Setup
* fix Team Project selector
* add back button to apps
* fix iframe url on OHDSI Atlas
* CADC-1787: add OCC logo to footer (#56)
* update to node 22.11, gen3FF 0.10.94 (uc-cdis#107)
* Feat: add PLP app steps and fix CSRF issue (#51)
New Features
Initial version of PLP steps in frontend-framework.
Includes PLP Attrition table and integration with argo-wrapper /submit endpoint
Bug Fixes
adds missing 'x-csrf-token': csrfToken, header (needed for POST requests)
Deployment changes
depends on specific versions of cohort-middleware and argo-wrapper (TODO - add release numbers)
* (CADC-1666): Create Input Details Page (#59)
* CADC-1666: Create Input Details Page
* CADC-1666: Job Details Table (#61)
* CADC-1796: Remove the word GWAS and change the URL (#63)
* CADC-1671: Results App Page Download Buttons (#62)
* (CADC-1801): add a logo to the browser tab too for QA (#64)
* Feat/plp improvements (#60)
* feat: multiple improvments to PLP app
- add remaining size, training set and test set sizes to submit modal
- limit test set relative size
- update Randomforest parameters
- add CommaSeparatedNumberInput type with tooltip
- add labels and better styling
- add Lasso parameters and improve the RandomForest ones
- introduce multiselect for CRITERION
- add SVM model option
* feat: improve SVM form
* feat: improve checkbox style in LassoParameters
* fix: add back "seed" field
* feat: added real state and dispatch to SelectModelAndParameters storybook
* tmp: temporarily setting session update time to 30min instead of 5min to test...
* fix: change arguments to arrays instead of csv strings
* fix: change initial value of percentageOfDataToUseAsTest to null
* fix: adjust testset size calculation
* fix: adjust code to deal with percentageOfDataToUseAsTest being empty
* fix: show -- for empty date
* fix: set default model parameters at mount/init
* feat: update PLP icon
* fix: fix the finishedAt date in results table for running workflows
* fix: fix wofklow details endpoint usage; remove "observation" from outcome window
* small card text changes
* fix: adjust RandomForest params
* fix: change MAX_LEAF_NODES to number
* Update ResourceBrowser.tsx (#67)
* fix: remove prefix from team project name display
* fix: improve MAX_SAMPLES in RandomForest params page
* fix: change MAX_LEAF_NODES to list type
* feat: enable ResultsPng
* tmp: change BOOTSTRAP bool to list[]
* fix: add some basic image src check
* fix: add snyk comment / ignore
* feat: convert ResultsPng to TS
* feat: working mock endpoint for plot
* feat: better styling for results plot
* feat: move download all button to right side
* fix: change last 3 params of RandomForest to lists
* fix: fix the quoted numbers problem
* feat: support other roc plots in results
* fix: fix for SVM parameters that should be a list
* feat: add back button; restore .trim()
* fix: fix accessibility issue in tab list by removing spaces from value used in ARIA
* feat: remove unused image
* feat: add better mock plot
* tmp: testing short updateSessionTime
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: Andrew Prokhorenkov <aprokh@uchicago.edu>
* (CADC-1814): Add Analysis tab for Notebooks
* update git node version
* update gen3 to 0.11.11
* Upstream integration (#71)
* update to eslint 9 (#78)
* cleanup navigation to point ot pages, update gen3 to 0.10.82, rename workspace config (#79)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fixs for precommit security check
* fix: package.json & package-lock.json to reduce vulnerabilities (#82)
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-JS-NEXT-9508709
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* update next dependencies to 15.2.4
* Update README.md (uc-cdis#84)
* update to @gen3/ff 0.10.85 (uc-cdis#85)
* Update README.md (uc-cdis#86)
add unrelated-histories information
* Fix docker start (uc-cdis#88)
* fix Docker not starting
* fix Docker not starting
* update env files (uc-cdis#89)
* Release 0.10.89 (uc-cdis#91)
* update to 0.10.89
* update to 0.10.89
* remove old config files/images
* update ContentDatabase
* update ContentDatabase paths (uc-cdis#93)
* update apps config path (uc-cdis#94)
* add theme colors into safelist (uc-cdis#95)
* update to 0.10.91 (uc-cdis#96)
* fix version to 0.10.91 (uc-cdis#97)
* update to 0.10.92 (uc-cdis#104)
* update to node 22.11, gen3FF 0.10.94 (uc-cdis#107)
* update package lock
* update docker
* update docker and node ci version
* update package lock
* update gen3
---------
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: cmlsn <100160785+cmlsn@users.noreply.github.com>
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* Upstream integration (#72)
* update to eslint 9 (#78)
* cleanup navigation to point ot pages, update gen3 to 0.10.82, rename workspace config (#79)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* fixs for precommit security check
* fix: package.json & package-lock.json to reduce vulnerabilities (#82)
The following vulnerabilities are fixed with an upgrade:
- https://snyk.io/vuln/SNYK-JS-NEXT-9508709
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* update next dependencies to 15.2.4
* Update README.md (uc-cdis#84)
* update to @gen3/ff 0.10.85 (uc-cdis#85)
* Update README.md (uc-cdis#86)
add unrelated-histories information
* Fix docker start (uc-cdis#88)
* fix Docker not starting
* fix Docker not starting
* update env files (uc-cdis#89)
* Release 0.10.89 (uc-cdis#91)
* update to 0.10.89
* update to 0.10.89
* remove old config files/images
* update ContentDatabase
* update ContentDatabase paths (uc-cdis#93)
* update apps config path (uc-cdis#94)
* add theme colors into safelist (uc-cdis#95)
* update to 0.10.91 (uc-cdis#96)
* fix version to 0.10.91 (uc-cdis#97)
* update to 0.10.92 (uc-cdis#104)
* update to node 22.11, gen3FF 0.10.94 (uc-cdis#107)
* update git node version
* update gen3 to 0.11.11
* update pacage lock
---------
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: cmlsn <100160785+cmlsn@users.noreply.github.com>
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
* add favicon (uc-cdis#109)
* add favicon
* add favicon
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* Add Datadog/remove faro (uc-cdis#105)
* add Datadog/remove faro
* remove Grafana
* CADC-1823: UI refreshing too often on protected content pages (#73)
* CADC-1823: reset sessionConfig to defalt values (#74)
* CADC-1824: Remove notebooks from the Analysis tab in QA (#75)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* CADC-1826: Workspaces- 'no pay model' (#76)
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* (CADC-1821): Incorporate caps bar on PLP App and Results App (#77)
* update gen3 to 0.11.18
* fix placement of workflow info (#78)
* update gen3 to 0.11.19 and add footer links
* add PLP notebook to analysis page (#80)
Co-authored-by: sara volk de garcia <smvgarcia@uchicago.edu>
* Update analysisTools.json (#81)
* update to 0.11.27 to fix logout issue (#82)
* fix(submit): No dashes in model name (#83)
* Update JobSubmitModal.tsx (uc-cdis#84)
* (CADC-1853): Add runtime to results app (uc-cdis#85)
* CADC-1853: Add runtime to results app
* CADC-1853: fix storybook ada error
---------
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
* CADC-1881: PLP Fix Frontend not passing model parameters (uc-cdis#86)
* update to Gen3 FEF 0.11.43 (uc-cdis#127)
* add GradioApp support (uc-cdis#128)
* add GradioApp support
* fix default
* update dependencies
* update more dependencies
* update more dependencies
* cleanup unused files
* fix build
* feat: upgrade storybook to v9
note: these changes were made automatically by the
upgrade script `npx storybook@latest upgrade`
* roll back changes for ada
* disab le a11y
* disable stories
* cleanup
* cleanup
* remove dd app
---------
Co-authored-by: Jarvis <113449836+jarvisraymond-uchicago@users.noreply.github.com>
Co-authored-by: Craig Barnes <craig.barnes@intelligentlight.com>
Co-authored-by: Shawn O'Connor <shawnoconnor@uchicago.edu>
Co-authored-by: Advaith Mahendrakar <120632885+AdvaithMahendrakar12@users.noreply.github.com>
Co-authored-by: smvgarcia <111767892+smvgarcia@users.noreply.github.com>
Co-authored-by: cmlsn <100160785+cmlsn@users.noreply.github.com>
Co-authored-by: snyk-bot <snyk-bot@snyk.io>
Co-authored-by: pieterlukasse <pieterlukasse@gmail.com>
Co-authored-by: Andrew Prokhorenkov <aprokh@uchicago.edu>
Co-authored-by: sara volk de garcia <smvgarcia@uchicago.edu>
Co-authored-by: J. Q. <55899496+jawadqur@users.noreply.github.com>
Co-authored-by: vzpgb <45467497+vzpgb@users.noreply.github.com>1 parent 4533d57 commit 452ced7
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lines changed- .github/workflows
- .storybook
- __mocks__
- config
- vpodcprod
- vpodcqa
- public
- htmlNotebooks
- images
- apps
- icons
- mock
- src
- components
- lib
- AnalysisApps
- GWASResults
- Components
- DateForTable
- DetailPageHeader
- ReturnHomeButton
- Diagrams
- ManhattanPlot
- QQPlot
- lib
- TestData
- Diagrams
- QQPlotData
- InputViewData
- ResultsViewData
- Utils
- Views
- Execution
- ExecutionTable
- Home
- HomeTableState
- HomeTable
- ActionsDropdown
- TableIcons
- Input
- AttritionTable
- JobDetails
- Results
- ResultsPheWeb
- QQPlotModal
- TopLociTable
- ResultsPng
- GWAS
- Components
- AttritionTableWrapper
- AttritionTableModal
- AttritionTable
- ChartIcons
- Congratulations
- Covariates
- Diagrams
- CohortsOverlapDiagram
- PhenotypeHistogram
- DismissibleMessagesList
- JobInputModal
- WorkflowLimitsModalErrorMessage
- MakeFullscreenButton
- ProgressBar
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- SelectCohort
- Utils
- SelectConfiguration
- SelectHare
- Steps
- ConfigureGWAS
- SelectCovariates
- SelectOutcome
- SelectStudyPopulation
- TestData
- States
- Utils
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- PLP
- Components/AttritionTableWrapper/AttritionTable
- Steps/SelectModelAndParameters
- ResourceBrowser
- Icons
- Results/Utils
- Discovery
- test
- pages
- api
- cohort-middleware
- cohort-stats/check-overlap/by-source-id/[sourceId]/by-cohort-definition-ids/[cohortAId]/[cohortBId]
- cohortdefinition-stats/by-source-id/[sourceId]
- by-cohort-definition-ids/[cohort1]/[cohort2]/by-observation-window-1st-cohort/[datasetObservationWindow]
- by-outcome-window-2nd-cohort/[outcomeObservationWindow]
- by-cohort-definition-id/[cohort1]/by-observation-window/[datasetObservationWindow]
- by-team-project
- concept-stats/by-source-id/[sourceId]/by-cohort-definition-id/[cohortDefinitionId]
- breakdown-by-concept-id/[hareConceptId]
- concept/by-source-id/[sourceId]/by-type
- sources
- ga4gh/wes/v2
- status/[workflowName]
- submit
- workflows
- user-monthly
- histogram/by-source-id/[sourceId]/by-cohort-definition-id/[cohortDefinitionId]/by-histogram-concept-id/[selectedConceptId]
- user/data/download/[dgname]/[itemid]
- gradio
- notebook
- staticNotebook
- styles
- types
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