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MinsukJi-NOAAMinsukJi-NOAA
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Feature/stampede (#213)
* Support coupled model on stampede
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14 files changed

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14 files changed

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-242
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‎CICE-interface/CICE‎

‎MOM6-interface/mkmf‎

‎WW3‎

Submodule WW3 updated 36 files

‎conf/configure.fv3.stampede.intel‎

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## NEMS configuration file
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##
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## Platform: Orion
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## Compiler: Intel with IntelMPI
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SHELL=/bin/sh
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################################################################################
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## Include the common configuration parts
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ifdef InNemsMakefile
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include $(TOP)/conf/configure.nems.NUOPC
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endif
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############
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# commands #
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############
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FC = mpiifort
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CC = mpiicc
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CXX = mpiicpc
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LD = mpiifort -mkl=sequential
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#########
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# flags #
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#########
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# default is 64-bit OpenMP non-hydrostatic build using AVX2
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DEBUG =
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REPRO =
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VERBOSE =
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OPENMP = Y
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AVX2 = Y
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HYDRO = N
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CCPP = N
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STATIC = N
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QUAD_PRECISION = Y
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MULTI_GASES = N
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include $(ESMFMKFILE)
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ESMF_INC = $(ESMF_F90COMPILEPATHS)
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NEMSIOINC = -I$(NEMSIO_INC)
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NCEPLIBS = $(POST_LIB) $(NEMSIO_LIB) $(G2_LIB4) $(G2TMPL_LIB) $(BACIO_LIB4) $(SP_LIBd) $(W3EMC_LIBd) $(W3NCO_LIBd) $(CRTM_LIB) $(JASPER_ROOT)/lib64/libjasper.a -lpng -lz
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##############################################
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# Need to use at least GNU Make version 3.81 #
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##############################################
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need := 3.81
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ok := $(filter $(need),$(firstword $(sort $(MAKE_VERSION) $(need))))
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ifneq ($(need),$(ok))
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$(error Need at least make version $(need). Load module gmake/3.81)
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endif
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NETCDF_ROOT = $(NETCDF)
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INCLUDE = -I$(NETCDF_ROOT)/include
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NETCDF_INC = -I$(NETCDF_ROOT)/include
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ifneq ($(findstring netcdf/4,$(LOADEDMODULES)),)
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NETCDF_LIB += -L$(NETCDF)/lib -lnetcdff -lnetcdf
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else
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NETCDF_LIB = -L$(NETCDF)/lib -lnetcdff -lnetcdf
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endif
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FPPFLAGS := -fpp -Wp,-w $(INCLUDE)
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CFLAGS := $(INCLUDE)
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FFLAGS := $(INCLUDE) -fno-alias -auto -safe-cray-ptr -save-temps -ftz -assume byterecl -nowarn -sox -align array64byte
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CPPDEFS += -Duse_libMPI -Duse_netCDF -DSPMD -DUSE_LOG_DIAG_FIELD_INFO -DUSE_GFSL63 -DGFS_PHYS -Duse_WRTCOMP
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CPPDEFS += -DNEW_TAUCTMAX -DINTERNAL_FILE_NML
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ifeq ($(HYDRO),Y)
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CPPDEFS +=
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else
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CPPDEFS += -DMOIST_CAPPA -DUSE_COND
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endif
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ifeq ($(32BIT),Y)
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CPPDEFS += -DOVERLOAD_R4 -DOVERLOAD_R8
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FFLAGS += -i4 -real-size 32
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else
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ifeq ($(REPRO),Y)
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FFLAGS += -i4 -real-size 64
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else
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FFLAGS += -i4 -real-size 64 -no-prec-div -no-prec-sqrt
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endif
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endif
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ifeq ($(REPRO),Y)
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FFLAGS += -qno-opt-dynamic-align
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CFLAGS += -qno-opt-dynamic-align
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else
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ifeq ($(AVX2),Y)
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# Don't use the AVX512 flags yet on hera
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#FFLAGS += -axSSE4.2,AVX,CORE-AVX2,CORE-AVX512 -qno-opt-dynamic-align
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#CFLAGS += -axSSE4.2,AVX,CORE-AVX2,CORE-AVX512 -qno-opt-dynamic-align
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FFLAGS += -xCORE-AVX2 -qno-opt-dynamic-align
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CFLAGS += -xCORE-AVX2 -qno-opt-dynamic-align
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else
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FFLAGS += -qno-opt-dynamic-align
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CFLAGS += -qno-opt-dynamic-align
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endif
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endif
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ifeq ($(MULTI_GASES),Y)
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CPPDEFS += -DMULTI_GASES
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endif
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ifeq ($(QUAD_PRECISION),Y)
108+
CPPDEFS += -DENABLE_QUAD_PRECISION
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endif
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111+
FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
112+
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
113+
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv -link_mpi=dbg
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TRANSCENDENTALS := -fast-transcendentals
116+
FFLAGS_OPENMP = -qopenmp
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FFLAGS_VERBOSE = -v -V -what
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119+
CFLAGS += -D__IFC -sox -fp-model source
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CFLAGS_OPT = -O2 -debug minimal
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CFLAGS_REPRO = -O2 -debug minimal
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CFLAGS_OPENMP = -qopenmp
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CFLAGS_DEBUG = -O0 -g -ftrapuv -traceback
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# Optional Testing compile flags. Mutually exclusive from DEBUG, REPRO, and OPT
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# *_TEST will match the production if no new option(s) is(are) to be tested.
128+
FFLAGS_TEST = -O3 -debug minimal -fp-model source -qoverride-limits
129+
CFLAGS_TEST = -O2
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LDFLAGS :=
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LDFLAGS_OPENMP := -qopenmp
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LDFLAGS_VERBOSE := -Wl,-V,--verbose,-cref,-M
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# start with blank LIBS
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LIBS :=
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ifeq ($(REPRO),Y)
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CPPDEFS += -DREPRO
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CFLAGS += $(CFLAGS_REPRO)
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FFLAGS += $(FFLAGS_REPRO)
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FAST :=
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else ifeq ($(DEBUG),Y)
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CPPDEFS += -DDEBUG
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CFLAGS += $(CFLAGS_DEBUG)
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FFLAGS += $(FFLAGS_DEBUG)
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FAST :=
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else ifeq ($(TEST),Y)
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CFLAGS += $(CFLAGS_TEST)
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FFLAGS += $(FFLAGS_TEST)
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FAST :=
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else
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CFLAGS += $(CFLAGS_OPT)
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FFLAGS += $(FFLAGS_OPT)
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FAST := $(TRANSCENDENTALS)
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endif
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ifeq ($(OPENMP),Y)
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CPPDEFS += -DOPENMP
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CFLAGS += $(CFLAGS_OPENMP)
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FFLAGS += $(FFLAGS_OPENMP)
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LDFLAGS += $(LDFLAGS_OPENMP)
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endif
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ifeq ($(VERBOSE),Y)
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CFLAGS += $(CFLAGS_VERBOSE)
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FFLAGS += $(FFLAGS_VERBOSE)
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LDFLAGS += $(LDFLAGS_VERBOSE)
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endif
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ifeq ($(CCPP),Y)
172+
CPPDEFS += -DCCPP
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CFLAGS += -I$(PATH_CCPP)/include
174+
FFLAGS += -I$(PATH_CCPP)/include
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LDFLAGS += -L$(PATH_CCPP)/lib -lccppphys -lccpp $(NCEPLIBS) -lxml2
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endif
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ifeq ($(CMEPS),Y)
179+
CPPDEFS += -DCMEPS
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endif
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LDFLAGS += $(LIBS)
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ifdef InNemsMakefile
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FFLAGS += $(ESMF_INC)
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CPPFLAGS += -traditional
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EXTLIBS = $(NCEPLIBS) $(ESMF_F90LINKPATHS) $(ESMF_LIB) $(LDFLAGS) $(NETCDF_LIB)
188+
endif

‎modulefiles/stampede.intel/fv3‎

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#%Module######################################################################
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##
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## NEMS FV3 Prerequisites: Hera/Intel
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proc ModulesHelp {} {
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puts stderr "\tcit - loads modules required for building and running FV3 under NEMS on Hera/Intel"
7+
}
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module-whatis "loads NEMS FV3 prerequisites for Hera/Intel"
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##
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## load contrib environment
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## load slurm utils (arbitrary.pl layout.pl)
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##
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#module use -a /contrib/sutils/modulefiles
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#module load sutils
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##
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## NCEP libraries
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##
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module load cmake/3.16.1
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setenv CMAKE_C_COMPILER mpiicc
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setenv CMAKE_CXX_COMPILER mpiicpc
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setenv CMAKE_Fortran_COMPILER mpiifort
26+
#setenv CMAKE_Platform hera.intel
27+
module use /work/07738/kgerheis/stampede2/hpc-stack/v1.0.0-beta1/modulefiles/stack
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module load hpc/1.0.0-beta1
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module load hpc-intel/18.0.2
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module load hpc-impi/18.0.2
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module load bacio/2.4.1
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module load crtm/2.3.0
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module load g2/3.4.1
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module load g2tmpl/1.9.1
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module load ip/3.3.3
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module load nceppost/dceca26
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module load nemsio/2.5.2
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module load sp/2.3.3
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module load w3emc/2.7.3
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module load w3nco/2.4.1
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43+
module load gfsio/1.4.1
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module load sfcio/1.4.1
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module load sigio/2.3.2
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module load gfsio/1.4.1
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module load sfcio/1.4.1
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module load sigio/2.3.2
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51+
module load jasper/2.0.15
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module load png/1.6.35
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module load zlib/1.2.11
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##
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## load ESMF library for above compiler / MPI combination
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## use pre-compiled EMSF library for above compiler / MPI combination
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##
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module load hdf5/1.10.6
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module load netcdf/4.7.4
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module load pio/2.5.1
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module load esmf/8_1_0_beta_snapshot_27

‎tests/RegressionTests_hera.intel.log‎

Lines changed: 15 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -1,10 +1,10 @@
1-
Wed Oct 14 00:12:28 UTC 2020
1+
Mon Oct 19 21:56:03 UTC 2020
22
Start Regression test
33

44

55
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1stepcold_ccpp_cmeps
66
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1stepcold_ccpp_cmeps/RESTART
7-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_1stepcold_atm_flux
7+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_1stepcold_atm_flux
88
Checking test 001 cpld_fv3_ccpp_mom6_cice_cmeps_1stepcold_atm_flux results ....
99
Comparing phyf048.tile1.nc .........OK
1010
Comparing phyf048.tile2.nc .........OK
@@ -60,7 +60,7 @@ Test 001 cpld_fv3_ccpp_mom6_cice_cmeps_1stepcold_atm_flux PASS
6060

6161
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp_cmeps
6262
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp_cmeps/RESTART
63-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_2d_atm_flux
63+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_2d_atm_flux
6464
Checking test 002 cpld_fv3_ccpp_mom6_cice_cmeps_2d_atm_flux results ....
6565
Comparing phyf048.tile1.nc .........OK
6666
Comparing phyf048.tile2.nc .........OK
@@ -116,7 +116,7 @@ Test 002 cpld_fv3_ccpp_mom6_cice_cmeps_2d_atm_flux PASS
116116

117117
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_3d_warm_ccpp_cmeps
118118
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_3d_warm_ccpp_cmeps/RESTART
119-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_3d_atm_flux
119+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_3d_atm_flux
120120
Checking test 003 cpld_fv3_ccpp_mom6_cice_cmeps_3d_atm_flux results ....
121121
Comparing phyf072.tile1.nc .........OK
122122
Comparing phyf072.tile2.nc .........OK
@@ -172,7 +172,7 @@ Test 003 cpld_fv3_ccpp_mom6_cice_cmeps_3d_atm_flux PASS
172172

173173
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_3d_warm_ccpp_cmeps
174174
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_3d_warm_ccpp_cmeps/RESTART
175-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_restart
175+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_restart
176176
Checking test 004 cpld_fv3_ccpp_mom6_cice_cmeps_restart results ....
177177
Comparing phyf072.tile1.nc .........OK
178178
Comparing phyf072.tile2.nc .........OK
@@ -228,7 +228,7 @@ Test 004 cpld_fv3_ccpp_mom6_cice_cmeps_restart PASS
228228

229229
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp_cmeps
230230
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp_cmeps/RESTART
231-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_2d_2threads
231+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_2d_2threads
232232
Checking test 005 cpld_fv3_ccpp_mom6_cice_cmeps_2d_2threads results ....
233233
Comparing phyf048.tile1.nc .........OK
234234
Comparing phyf048.tile2.nc .........OK
@@ -284,7 +284,7 @@ Test 005 cpld_fv3_ccpp_mom6_cice_cmeps_2d_2threads PASS
284284

285285
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp_cmeps
286286
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp_cmeps/RESTART
287-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_2d_decomp
287+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_2d_decomp
288288
Checking test 006 cpld_fv3_ccpp_mom6_cice_cmeps_2d_decomp results ....
289289
Comparing phyf048.tile1.nc .........OK
290290
Comparing phyf048.tile2.nc .........OK
@@ -340,7 +340,7 @@ Test 006 cpld_fv3_ccpp_mom6_cice_cmeps_2d_decomp PASS
340340

341341
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1d_warm_satmedmf_ccpp_cmeps
342342
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1d_warm_satmedmf_ccpp_cmeps/RESTART
343-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_1d_satmedmf
343+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_1d_satmedmf
344344
Checking test 007 cpld_fv3_ccpp_mom6_cice_cmeps_1d_satmedmf results ....
345345
Comparing phyf024.tile1.nc .........OK
346346
Comparing phyf024.tile2.nc .........OK
@@ -396,7 +396,7 @@ Test 007 cpld_fv3_ccpp_mom6_cice_cmeps_1d_satmedmf PASS
396396

397397
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp384_cmeps
398398
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp384_cmeps/RESTART
399-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux
399+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux
400400
Checking test 008 cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux results ....
401401
Comparing phyf048.tile1.nc .........OK
402402
Comparing phyf048.tile2.nc .........OK
@@ -452,7 +452,7 @@ Test 008 cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux PASS
452452

453453
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp384_cmeps_frac
454454
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_2d_warm_ccpp384_cmeps_frac/RESTART
455-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux_frac
455+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux_frac
456456
Checking test 009 cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux_frac results ....
457457
Comparing phyf048.tile1.nc .........OK
458458
Comparing phyf048.tile2.nc .........OK
@@ -508,7 +508,7 @@ Test 009 cpld_fv3_ccpp_384_mom6_cice_cmeps_2d_atm_flux_frac PASS
508508

509509
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1d_bmrt_ccpp_cmeps
510510
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1d_bmrt_ccpp_cmeps/RESTART
511-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_384_mom6_cice_cmeps_1d_bmark_rt
511+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_384_mom6_cice_cmeps_1d_bmark_rt
512512
Checking test 010 cpld_fv3_ccpp_384_mom6_cice_cmeps_1d_bmark_rt results ....
513513
Comparing phyf024.tile1.nc .........OK
514514
Comparing phyf024.tile2.nc .........OK
@@ -601,7 +601,7 @@ Test 010 cpld_fv3_ccpp_384_mom6_cice_cmeps_1d_bmark_rt PASS
601601

602602
baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1d_bmwav_ccpp_cmeps
603603
mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_1d_bmwav_ccpp_cmeps/RESTART
604-
working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_384_mom6_cice_cmeps_ww3_1d_bmark_rt
604+
working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_384_mom6_cice_cmeps_ww3_1d_bmark_rt
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Checking test 011 cpld_fv3_ccpp_384_mom6_cice_cmeps_ww3_1d_bmark_rt results ....
606606
Comparing phyf024.tile1.nc .........OK
607607
Comparing phyf024.tile2.nc .........OK
@@ -660,7 +660,7 @@ Test 011 cpld_fv3_ccpp_384_mom6_cice_cmeps_ww3_1d_bmark_rt PASS
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baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_6h_warm_debug_ccpp_cmeps
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mediator baseline dir = /scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/develop-20201012/RT-Baselines_6h_warm_debug_ccpp_cmeps/RESTART
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working dir = /scratch1/NCEPDEV/stmp2/Bin.Li/S2S_RT/rt_62183/cpld_fv3_ccpp_mom6_cice_cmeps_6h_debug
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working dir = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_270998/cpld_fv3_ccpp_mom6_cice_cmeps_6h_debug
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Checking test 012 cpld_fv3_ccpp_mom6_cice_cmeps_6h_debug results ....
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Comparing phyf006.tile1.nc .........OK
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Comparing phyf006.tile2.nc .........OK
@@ -716,5 +716,5 @@ Test 012 cpld_fv3_ccpp_mom6_cice_cmeps_6h_debug PASS
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REGRESSION TEST WAS SUCCESSFUL
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Wed Oct 14 07:24:59 UTC 2020
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Elapsed time: 07h:12m:33s. Have a nice day!
719+
Mon Oct 19 23:15:11 UTC 2020
720+
Elapsed time: 01h:19m:09s. Have a nice day!

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