#Project Name: PathwayTPR
This project is designed to identify disrupted pathways from tumor samples. The aim is to provide researchers with a tool to analyze gene expression data and identify pathways that are significantly altered in cancer samples.
#Installation
To install PathwayTPR, follow these steps:
Clone the repository from Github: git clone https://github.com/ugur0sahin/PathwayTPR.git Navigate to the project directory: cd PathwayTPR Install the required dependencies: pip install -r requirements.txt Usage
To use PathwayTPR, follow these steps:
Prepare your data: PathwayTPR requires gene expression data as input. The data should be in a tab-separated format, with gene names as row names and sample names as column names. Run the program: python main.py path/to/data.txt The output will be saved as a tab-separated file in the results directory. Contributing
If you wish to contribute to PathwayTPR, please fork the repository and create a new branch for your changes. Once you have made your changes, submit a pull request and we will review your changes.
#License
PathwayTPR is licensed under the MIT License. See LICENSE for more information.