Merge pull request #3 from ukhsa-collaboration/dev

Dev - complete functions merging to main

R cmd checks were done locally

Author: harshana-ukhsa

.Rbuildignore

@@ -9,4 +9,4 @@
 ^_pkgdown\.yml$
 ^\.github$
 docs
-dev/
+dev

.gitignore

@@ -4,4 +4,4 @@
 .httr-oauth
 .DS_Store
 .quarto
-dev/
+dev/

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: epiviz
-Title: data visualisation functions for epidemiological data science products
-Version: 0.0.0.9006
+Title: Data Visualisation Functions for Epidemiological Data Science Products
+Version: 0.1.0
 Authors@R: 
     c(person(given="Harshana", family="Liyanage", email="harshana.liyanage@ukhsa.gov.uk", role = c("aut","cre"),
            comment = c(ORCID = "0000-0001-9738-6349")),
@@ -12,16 +12,20 @@ Authors@R:
     person(given="Jordan", family="Worth", email="jordan.worth@ukhsa.gov.uk", role = c("aut")),
     person(given="James", family="Duke", email="james.duke@ukhsa.gov.uk", role = c("aut")),
     person(given="Emma", family="Parker", email="emma.k.parker@ukhsa.gov.uk", role = c("aut")))
-Description: The epiviz package provides a set of functions to produce frequently used static and interactive graphs in epidemiological data science products.
+Description: The 'epiviz' package provides a set of functions to produce frequently used static and interactive graphs in epidemiological data science products.
 License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.2
 LazyData: true
 Suggests: 
-    testthat (>= 3.0.0)
+    testthat (>= 3.0.0),
+    mockery,
+    withr,
+    yarrr
 Config/testthat/edition: 3
 Imports: 
+    grDevices,
     assertthat,
     classInt,
     dplyr,
@@ -34,7 +38,13 @@ Imports:
     stringr,
     scales,
     tidyr,
-    yarrr,
-    lubridate
+    lubridate,
+    ISOweek,
+    forcats,
+    slider,
+    rlang,
+    ellmer,
+    jsonlite,
+    lifecycle
 Depends: 
-    R (>= 2.10)
+    R (>= 4.1.0)

NAMESPACE

@@ -1,15 +1,19 @@
 # Generated by roxygen2: do not edit by hand
 
-export(agesex_pyramid_grouped)
-export(agesex_pyramid_linelist)
+export(age_sex_pyramid)
 export(col_chart)
+export(epi_curve)
 export(epi_map)
 export(line_chart)
+export(llm_interpret)
 export(point_chart)
+import(ISOweek)
 import(RColorBrewer)
 import(assertthat)
 import(classInt)
 import(dplyr)
+import(ellmer)
+import(forcats)
 import(ggplot2)
 import(grDevices)
 import(htmltools)
@@ -19,6 +23,13 @@ import(plotly, except = last_plot)
 
 import(scales)
 import(sf)
+import(slider)
 import(stringr)
 import(tidyr)
-import(yarrr)
+importFrom(dplyr,group_by)
+importFrom(dplyr,summarise)
+importFrom(graphics,box)
+importFrom(jsonlite,toJSON)
+importFrom(lifecycle,badge)
+importFrom(lifecycle,signal_stage)
+importFrom(rlang,.data)