Merge branch 'dev'

Author: harshanal

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: epiviz
 Title: Data Visualisation Functions for Epidemiological Data Science Products
-Version: 0.1.1
+Version: 0.1.2
 Authors@R: 
     c(person(given="Harshana", family="Liyanage", email="harshana.liyanage@ukhsa.gov.uk", role = c("aut","cre"),
            comment = c(ORCID = "0000-0001-9738-6349")),

NEWS.md

@@ -1,11 +1,20 @@
-# epiviz 0.0.0.9001
 
-* Initial GitHub code transfer from internal repo.
+# epiviz 0.1.2
+
+## CRAN submission fixes
+
+* Added `on.exit()` calls to properly restore user options in `.onLoad()`
+* Replaced `\dontrun{}` with `\donttest{}` or unwrapped examples where appropriate
+* Resubmission addressing CRAN reviewer feedback
+
+# epiviz 0.1.1
+
+* Initial CRAN submission
 
 # epiviz 0.1.0
 
 * Initial version for internal production apps
 
-# epiviz 0.1.1
+# epiviz 0.0.0.9001
 
-* Initial CRAN submission
+* Initial GitHub code transfer from internal repo.

R/age_sex_pyramid.R

@@ -49,7 +49,7 @@
 #' When `grouped = TRUE`, it assumes the data is already grouped and uses the provided values directly to generate the pyramid.
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' # Example using a line list
 #' df <- epiviz::lab_data
 #' age_sex_pyramid(

R/agesex_pyramid_grouped.R

@@ -25,7 +25,7 @@
 #' @import dplyr
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' data <- data.frame(
 #'  age_group = rep(c("0-4", "5-18", "19-64", "65+"), each = 2),
 #'  sex = rep(c("Female", "Male"), times = 4),

R/base_gg.R

@@ -6,7 +6,7 @@
 #' @noRd
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' environment(base_gg) <- environment()
 #' base <- base_gg()
 #' }

R/base_plotly.R

@@ -6,7 +6,7 @@
 #' @noRd
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' environment(base_plotly) <- environment()
 #' base <- base_plotly()
 #' }

R/col_chart.R

@@ -153,7 +153,7 @@
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #'
 #' # Example 1: Basic column chart
 #'

R/epi_curve.R

@@ -132,7 +132,7 @@
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #'
 #' # Example 1: Basic epi curve
 #'

R/epi_map.R

@@ -89,7 +89,7 @@
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #'
 #' # Example 1: Create a static map of Staphylococcus Aureus detections in London
 #' # Local Authority Districts.

R/point_chart.R

@@ -137,7 +137,7 @@
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #'
 #'
 #'