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Use latest version of cwl-utils
Latest version of cwl-utils has common-workflow-language/cwl-utils#288 and common-workflow-language/cwl-utils#287
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Dockerfile

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@@ -174,19 +174,5 @@ ENV PATH="/home/${GITHUB_ACTIONS_USER_NAME}/.conda/envs/${CONDA_ENV_NAME}/bin:${
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# Set ICAv2 CLI plugins home
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ENV ICAV2_CLI_PLUGINS_HOME="/home/${GITHUB_ACTIONS_USER_NAME}/.icav2-cli-plugins/"
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# Add cwl-utils (with cwl-inputs-schema-gen) to cwl-ica environment
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RUN ( \
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cd "/home/${GITHUB_ACTIONS_USER_NAME}" && \
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echo "Cloning cwl-utils" 1>&2 && \
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git clone --branch "${CWL_UTILS_REPO_BRANCH}" "${CWL_UTILS_REPO_PATH}" "cwl-utils" && \
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echo "Installing cwl-utils" 1>&2 && \
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( \
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cd 'cwl-utils' && \
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"/home/${GITHUB_ACTIONS_USER_NAME}/.conda/envs/${CONDA_ENV_NAME}/bin/pip" install . \
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) && \
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echo "Cleaning up" 1>&2 && \
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rm -rf cwl-utils \
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)
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# Set entrypoint
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CMD "cwl-ica"

pyproject.toml

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@@ -20,7 +20,7 @@ classifiers = [
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dependencies = [
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# Requirements created by pip-reqs
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"beautifulsoup4 >= 4.12.2, < 5",
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"cwl_utils >= 0.32, < 1",
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"cwl_utils >= 0.38, < 1",
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"deepdiff >= 6.7.1, < 7",
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"docopt >= 0.6.2, < 1",
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"in_place >= 1.0.0, < 2",

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