Merge pull request #5 from uw-it-aca/pm-RTTL-39-add-rstudio

Pm rttl 39 add rstudio

Author: paulkm

rstudio/Dockerfile

@@ -0,0 +1,28 @@
+ARG BASE_CONTAINER=jupyter/r-notebook:hub-1.3.0
+FROM $BASE_CONTAINER
+
+RUN pip install jupyter-rsession-proxy
+RUN conda install -y -c r r-tidyverse
+
+# install rstudio-server
+# Note: 1.4x & 1.3x have problems with proxying and auth flow, see: https://github.com/jupyterhub/jupyter-rsession-proxy/issues/97
+USER root
+RUN apt-get update && \
+    apt-get install gdebi-core -y && \
+    curl --silent -L --fail http://security.ubuntu.com/ubuntu/pool/main/o/openssl1.0/libssl1.0.0_1.0.2n-1ubuntu5.6_amd64.deb > /tmp/libssl.deb && \
+    apt-get install -y /tmp/libssl.deb && \
+    curl --silent -L --fail https://download2.rstudio.org/server/trusty/amd64/rstudio-server-1.2.5042-amd64.deb > /tmp/rstudio.deb && \
+    echo 'f6d212f2fdc1e1b4e605256a91b69fed6b61c046374934d262b2c3f1e234c0d6  /tmp/rstudio.deb' | shasum -a 256 -c - && \
+    apt-get install -y /tmp/rstudio.deb && \
+    rm /tmp/rstudio.deb && \
+    rm /tmp/libssl.deb && \
+    apt-get clean
+
+# These were needed in 1.4x - keeping in case proxy issues are sorted
+# RUN rm /var/lib/rstudio-server/rstudio.sqlite && \
+#    chmod -R 777 /var/lib/rstudio-server
+# ENV RSESSION_PROXY_RSTUDIO_1_4=yes
+
+ENV PATH=$PATH:/usr/lib/rstudio-server/bin
+
+USER $NB_USER

rstudio/Makefile

@@ -0,0 +1,13 @@
+APP_BIN?=app
+
+.PHONY: default
+default: build
+
+DOCKER_REPO?=gcr.io/uwit-mci-axdd/rttl-rstudio-notebook
+DOCKER_TAG?=fdf878c
+
+build:
+	docker build -t $(DOCKER_REPO):latest -t $(DOCKER_REPO):$(DOCKER_TAG) .
+
+push: build
+	docker push $(DOCKER_REPO):latest

rstudio/README.md

@@ -0,0 +1,9 @@
+# rttl-notebooks - RStudio
+Docker image for RStudio notebook using jupyter-rsession-proxy to handle auth flow with JupyterHub. Note: latest RStudio version that runs correctly is 1.2.5042
+
+Running notebook locally
+- `docker run -p 8888:8888 gcr.io/uwit-mci-axdd/rttl-rstudio-notebook:latest`
+- Console output will include localhost url with access token. Add '/rstudio' to the end of the path portion
+
+Accessing server shell locally
+- `docker run -it --entrypoint /bin/bash gcr.io/uwit-mci-axdd/rttl-rstudio-notebook:latest`