final fix

opitzl · opitzl · commit 2a1431a61538 · 2023-11-10T10:28:44.000+01:00
diff --git a/R/app-VeloCyto.R b/R/app-VeloCyto.R
@@ -47,6 +47,7 @@ ezMethodVeloCyto <- function(input=NA, output=NA, param=NA){
             system('mv sample_alignments.bam possorted_genome_bam.bam')
             system('samtools index possorted_genome_bam.bam')
             system('mv sample_filtered_feature_bc_matrix filtered_feature_bc_matrix')
+            system('mv * ..')
         setwd('../../..')
     }
     cmd <- paste('velocyto run10x', sampleDir, gtfFile, '-@', param$cores)

Original file line number	Diff line number	Diff line change
`@@ -47,6 +47,7 @@ ezMethodVeloCyto <- function(input=NA, output=NA, param=NA){`
`47`	`47`	`system('mv sample_alignments.bam possorted_genome_bam.bam')`
`48`	`48`	`system('samtools index possorted_genome_bam.bam')`
`49`	`49`	`system('mv sample_filtered_feature_bc_matrix filtered_feature_bc_matrix')`
	`50`	`+ system('mv * ..')`
`50`	`51`	`setwd('../../..')`
`51`	`52`	`}`
`52`	`53`	`cmd <- paste('velocyto run10x', sampleDir, gtfFile, '-@', param$cores)`