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Added Azimuth and SingleR like ScSeurat
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master/lib/ScSeuratCombineApp.rb

Lines changed: 4 additions & 1 deletion
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@@ -40,7 +40,10 @@ def initialize
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@params['enrichrDatabase'] = ['Tabula_Muris', 'Tabula_Sapiens', 'Azimuth_Cell_Types_2021', 'PanglaoDB_Augmented_2021', 'CellMarker_Augmented_2021', 'Allen_Brain_Atlas_10x_scRNA_2021', 'Human_Gene_Atlas', 'Mouse_Gene_Atlas', ]
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@params['enrichrDatabase','multi_selection'] = true
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@params['enrichrDatabase','all_selected'] = true
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@params['Azimuth'] = ["none", "adiposeref", "bonemarrowref", "fetusref", "heartref", "humancortexref",
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"kidneyref", "lungref", "mousecortexref", "pancreasref", "pbmcref", "tonsilref"]
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@params['SingleR'] = ['none', 'BlueprintEncodeData', 'DatabaseImmuneCellExpressionData', 'HumanPrimaryCellAtlasData',
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'ImmGenData', 'MonacoImmuneData', 'MouseRNAseqData', 'NovershternHematopoieticData']
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@params['pcGenes'] = ''
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@params['pcGenes', 'description'] = 'The genes used in supvervised clustering'
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@params['npcs'] = '30'

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