Suitable R version for running HybridCheck

[Hinox47]

Which R version should I install for running it properly? I tried some but I'm always getting problems...

Thanks!

[TransGirlCodes]

Hi @Hinox47 I'm running R 3.6.1 without any problems? Which version are you using? Can you paste the errors you're getting?

[yuanjigui]

Error: Failed to install 'HybridCheck' from GitHub:
! System command 'Rcmd.exe' failed
In addition: Warning messages:
1: packages ‘Biostrings’, ‘IRanges’ are not available for this version of R

Versions of these packages for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
2: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying D:\Program Files\R\R-4.2.2\library\00LOCK\vctrs\libs\x64\vctrs.dll to D:\Program Files\R\R-4.2.2\library\vctrs\libs\x64\vctrs.dll: Permission denied

[yuanjigui]

devtools::install_github("HybridCheck")
Error in parse_repo_spec(repo) :
Invalid git repo specification: 'HybridCheck'
devtools::install_github("vanOosterhoutLab/HybridCheck", build_vignettes = TRUE)
Downloading GitHub repo vanOosterhoutLab/HybridCheck@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All
2: CRAN packages only
3: None
4: vctrs (0.5.2 -> 0.6.0) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 1
vctrs (0.5.2 -> 0.6.0) [CRAN]
Skipping 2 packages not available: Biostrings, IRanges
Installing 3 packages: vctrs, Biostrings, IRanges
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/vctrs_0.6.0.zip'
Content type 'application/zip' length 1338729 bytes (1.3 MB)
downloaded 1.3 MB

程序包‘vctrs’打开成功，MD5和检查也通过
Warning: 无法将拆除原来安装的程序包‘vctrs’
Warning: 回复了‘vctrs’

下载的二进制程序包在
C:\Users\Administrator\AppData\Local\Temp\RtmpIJykGA\downloaded_packages里
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file 'C:\Users\Administrator\AppData\Local\Temp\RtmpIJykGA\remotes35ac551db4\vanOosterhoutLab-HybridCheck-38b22bf/DESCRIPTION' ...
─ preparing 'HybridCheck':
✔ checking DESCRIPTION meta-information ...
─ installing the package to build vignettes
-----------------------------------
ERROR: dependencies 'IRanges', 'Biostrings' are not available for package 'HybridCheck'
─ removing 'C:/Users/Administrator/AppData/Local/Temp/RtmpAvYNTO/Rinst22502b3c7e30/HybridCheck'
-----------------------------------
ERROR: package installation failed
Error: Failed to install 'HybridCheck' from GitHub:
! System command 'Rcmd.exe' failed
In addition: Warning messages:
1: packages ‘Biostrings’, ‘IRanges’ are not available for this version of R

Versions of these packages for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
2: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying D:\Program Files\R\R-4.2.2\library\00LOCK\vctrs\libs\x64\vctrs.dll to D:\Program Files\R\R-4.2.2\library\vctrs\libs\x64\vctrs.dll: Permission denied