fix chipseeker dependency warning

Author: siebrenf

seq2science/envs/chipseeker.yaml

@@ -4,4 +4,5 @@ channels:
   - bioconda
 dependencies:
   - bioconda::bioconductor-chipseeker=1.42.0
+  - bioconda::bioconductor-txdbmaker=1.2.0
   - conda-forge::conda-ecosystem-user-package-isolation=1.0

seq2science/scripts/chipseeker.R

@@ -33,7 +33,7 @@ cat('\n')
 
 
 # load the gtf file and make it a txdb
-txdb_from_gtf <- makeTxDbFromGFF(gtf)
+txdb_from_gtf <- txdbmaker::makeTxDbFromGFF(gtf)
 
 peaks_list = list()
 for (i in seq_along(narrowpeaks)) {