conda installer works again (hopefully)

Author: maarten.vandersande

requirements.yaml

@@ -5,8 +5,8 @@ channels:
 dependencies:
   - conda-forge::python=3.10
   - bioconda::snakemake-minimal=7.25.0
-  - conda-forge::conda=23.1.0
-  - conda-forge::mamba=1.2.0
+  - conda-forge::conda=24.1.2
+  - conda-forge::mamba=1.5.9
   - bioconda::genomepy=0.16.1
   - conda-forge::biopython=1.81
   - conda-forge::filelock=3.10.7

seq2science/cli.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+	#!/usr/bin/env python
 """
 This is the user's entry-point for the seq2science tool.
 """

seq2science/util.py

@@ -1043,7 +1043,8 @@ def _get_current_version(package):
     # xdg keeps its version in a pyproject.toml (not included)
     # argcomplete keeps its version in a setup.py (not included)
     # trackhub versioning is weird
-    if package in ["conda-ecosystem-user-package-isolation", "xdg", "argcomplete", "trackhub"]:
+    # mamba is not a package
+    if package in ["conda-ecosystem-user-package-isolation", "xdg", "argcomplete", "trackhub", "mamba"]:
         return None
     if package == "python":
         return sys.version.split()[0]