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bugSomething isn't workingSomething isn't working
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- currently, the
Run-Test-Modegithub-workflow is disabled (performingCI=true snakemake --cores=1 -p all). this is because data excerpts for the pre-mehari workflow is missing - the urls in
download_urls.ymlhave to be maintained manually. there might be errors in there as the file is large. it is really hard to maintain (varfish-db-downloader wget urls-download).
Todos
- add all pre-mehari links to
download_urls.ymland generate the data excerpts - make sure all links in
download_urls.ymlare matching the versions inversions.pyand the links used in the rules. - maybe there is a better strategy? double maintenance is error prone; maintaining the
download_urls.ymlmanually is not trivial.
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