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snakemake test for CI currently disabled #107

@stolpeo

Description

@stolpeo

Issue

  • currently, the Run-Test-Mode github-workflow is disabled (performing CI=true snakemake --cores=1 -p all). this is because data excerpts for the pre-mehari workflow is missing
  • the urls in download_urls.yml have to be maintained manually. there might be errors in there as the file is large. it is really hard to maintain (varfish-db-downloader wget urls-download).

Todos

  • add all pre-mehari links to download_urls.yml and generate the data excerpts
  • make sure all links in download_urls.yml are matching the versions in versions.py and the links used in the rules.
  • maybe there is a better strategy? double maintenance is error prone; maintaining the download_urls.yml manually is not trivial.

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