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vcellmikevcellmike
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Merge pull request #7 from virtualcell/UpdateAPI
Change API to the new VCell v0 API
2 parents 47bd9d6 + 65e39dc commit 9245b1e

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‎app.js‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -296,7 +296,7 @@ async function getModelList(termMap) {
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//create link and fetch from API
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const api_url =
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"https://vcellapi.cam.uchc.edu/biomodel?bmName=" + termMap["bmName"] + "&bmId=" + termMap["bmId"] + "&category=" + termMap["category"] + "&owner=" + termMap["owner"] + "&savedLow=" + termMap["savedLow"] + "&savedHigh=" + termMap["savedHigh"] + "&startRow=" + APIrow + "&maxRows=" + termMap['maxModels'] + "&orderBy=" + termMap["orderBy"];
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"https://vcell.cam.uchc.edu/api/v0/biomodel?bmName=" + termMap["bmName"] + "&bmId=" + termMap["bmId"] + "&category=" + termMap["category"] + "&owner=" + termMap["owner"] + "&savedLow=" + termMap["savedLow"] + "&savedHigh=" + termMap["savedHigh"] + "&startRow=" + APIrow + "&maxRows=" + termMap['maxModels'] + "&orderBy=" + termMap["orderBy"];
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const fetch_response = await fetch(api_url);
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json = await fetch_response.json();
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}
@@ -423,7 +423,7 @@ app.get("/testCuratedList/:search", async (req, res) => {
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// main Dashboard for dynamic models selected from curated list page
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app.get("/curatedList/model/:name", (req, res) => {
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const api_url =
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'https://vcellapi.cam.uchc.edu/biomodel/' + req.params.name + '/biomodel.vcml';
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'https://vcell.cam.uchc.edu/api/v0/biomodel/' + req.params.name + '/biomodel.vcml';
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var parser = new xml2js.Parser();
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fetch(api_url).then(function(response) {
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return response.text().then(function(text) {
@@ -479,7 +479,7 @@ app.get("/test/:name", (req, res) => {
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app.get("/curatedList/printModel/:name", (req, res) => {
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modelName = req.params.name;
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const api_url =
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'https://vcellapi.cam.uchc.edu/biomodel/' + modelName + '/biomodel.vcml';
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'https://vcell.cam.uchc.edu/api/v0/biomodel/' + modelName + '/biomodel.vcml';
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var parser = new xml2js.Parser();
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fetch(api_url).then(function(response) {
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return response.text().then(function(text) {

‎views/model.hbs‎

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -163,7 +163,7 @@
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<div class="reactionDiagram" id="diagram">
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{{#each data.vcml.BioModel}}
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{{#each this.Version}}
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<img class="model-page-diagram" src="https://vcellapi.cam.uchc.edu/biomodel/{{this.$.KeyValue}}/diagram"
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<img class="model-page-diagram" src="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.$.KeyValue}}/diagram"
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alt="reactionDiagram" draggable="false" />
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{{/each}}
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{{/each}}
@@ -1440,15 +1440,15 @@
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<tr>
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<td>Virtual Cell Markup Language</td>
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<td data-label="File" class="File">
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<a href="https://vcellapi.cam.uchc.edu/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.vcml">
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<a href="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.vcml">
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VCML File
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</a>
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</td>
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</tr>
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<tr>
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<td>PDF Report</td>
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<td data-label="File" class="File">
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<a href="https://vcellapi.cam.uchc.edu/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.pdf">
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<a href="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.pdf">
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Report
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</a>
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</td>
@@ -1457,7 +1457,7 @@
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<td>COMBINE Archive</td>
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<td data-label="File" class="File">
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<a href=
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"https://vcellapi.cam.uchc.edu/biomodel/
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"https://vcell.cam.uchc.edu/api/v0/biomodel/
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{{~this.Version.[0].$.KeyValue~}}
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/biomodel.omex?appname={{convertSpace this.SimulationSpec.[0].$.Name}}"
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>
@@ -1469,7 +1469,7 @@
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<td>SEDML</td>
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<td data-label="File" class="File">
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<a href=
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"https://vcellapi.cam.uchc.edu/biomodel/
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"https://vcell.cam.uchc.edu/api/v0/biomodel/
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{{~this.Version.[0].$.KeyValue~}}
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/biomodel.sedml?appname={{convertSpace this.SimulationSpec.[0].$.Name}}"
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>
@@ -1499,7 +1499,7 @@
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<td data-label="File" class="File">
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{{#each SimulationSpec}}
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<a href=
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"https://vcellapi.cam.uchc.edu/biomodel/
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"https://vcell.cam.uchc.edu/api/v0/biomodel/
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{{~../this.Version.[0].$.KeyValue~}}
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/biomodel.bngl?appname={{convertSpace this.$.Name}}"
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>
@@ -1516,7 +1516,7 @@
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<td data-label="File" class="File">
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{{#each SimulationSpec}}
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<a href=
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"https://vcellapi.cam.uchc.edu/biomodel/
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"https://vcell.cam.uchc.edu/api/v0/biomodel/
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{{~../this.Version.[0].$.KeyValue~}}
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/biomodel.sbml?appname={{convertSpace this.$.Name}}"
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>
@@ -1533,7 +1533,7 @@
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<td data-label="File" class="File">
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{{#each SimulationSpec}}
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<a href=
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"https://vcellapi.cam.uchc.edu/biomodel/
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"https://vcell.cam.uchc.edu/api/v0/biomodel/
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{{~../this.Version.[0].$.KeyValue~}}
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/biomodel.m?appname={{convertSpace this.$.Name}}"
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>
@@ -1550,7 +1550,7 @@
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<td data-label="File" class="File">
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{{#each SimulationSpec}}
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<a href=
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"https://vcellapi.cam.uchc.edu/biomodel/
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"https://vcell.cam.uchc.edu/api/v0/biomodel/
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{{~../this.Version.[0].$.KeyValue~}}
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/biomodel.xml?appname={{convertSpace this.$.Name}}"
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>

‎views/printModel.hbs‎

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@@ -14,7 +14,7 @@
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<h2 class="sectionTitle">Reaction Diagram</h2>
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{{#each data.vcml.BioModel}}
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{{#each this.Version}}
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<img class="image-zoom-available" src="https://vcellapi.cam.uchc.edu/biomodel/{{this.$.KeyValue}}/diagram"
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<img class="image-zoom-available" src="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.$.KeyValue}}/diagram"
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alt="reactionDiagram" draggable="false" />
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{{/each}}
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{{/each}}

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