fix implicit dependencies

Author: jcschaff

poetry.lock

@@ -28,9 +28,10 @@ typing-extensions = "^4.12.2"
 urllib3 = "^2.3.0"
 requests = "^2.32.3"
 python-dateutil = "^2.9.0.post0"
-notebook = "^7.3.2"
 pyvista = "^0.44.2"
 python-libsbml = "^5.20.4"
+matplotlib = "^3.10.0"
+ipython = "^8.32.0"
 
 [tool.poetry.group.dev.dependencies]
 pytest = "^7.2.0"
@@ -40,6 +41,7 @@ mypy = "^1.5.1"
 pre-commit = "^3.8.0"
 tox = "^4.11.1"
 types-requests = "^2.32.0.20241016"
+notebook = "^7.3.2"
 
 [tool.poetry.group.docs.dependencies]
 mkdocs = "^1.6.1"