Skip to content

Commit dc25fa2

Browse files
authored
Merge pull request #5 from virtualcell/vtk-integration
integrate vtk visualization and analysis
2 parents 3649009 + c043678 commit dc25fa2

File tree

642 files changed

+12646
-1867
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

642 files changed

+12646
-1867
lines changed

.devcontainer/devcontainer.json

Lines changed: 0 additions & 27 deletions
This file was deleted.

.devcontainer/postCreateCommand.sh

Lines changed: 0 additions & 7 deletions
This file was deleted.

empty_mesh_Nucleus.vtu

Lines changed: 35 additions & 0 deletions
Large diffs are not rendered by default.

examples/combined_fvsolver_data.ipynb

Lines changed: 272 additions & 147 deletions
Large diffs are not rendered by default.

examples/empty_mesh_subdomain0.vtu

Lines changed: 35 additions & 0 deletions
Large diffs are not rendered by default.

examples/fv_solver_workflow.ipynb

Lines changed: 321 additions & 1347 deletions
Large diffs are not rendered by default.

examples/sphere-shrinking.mp4

750 KB
Binary file not shown.

examples/test_output/empty_mesh_subdomain0.vtu

Lines changed: 35 additions & 0 deletions
Large diffs are not rendered by default.
Lines changed: 205 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,205 @@
1+
{
2+
"domainName": "subdomain0",
3+
"finiteVolumeIndices": [
4+
{ "globalIndex": 0, "regionIndex": 0 },
5+
{ "globalIndex": 1, "regionIndex": 0 },
6+
{ "globalIndex": 2, "regionIndex": 0 },
7+
{ "globalIndex": 3, "regionIndex": 0 },
8+
{ "globalIndex": 4, "regionIndex": 0 },
9+
{ "globalIndex": 5, "regionIndex": 0 },
10+
{ "globalIndex": 6, "regionIndex": 0 },
11+
{ "globalIndex": 7, "regionIndex": 0 },
12+
{ "globalIndex": 8, "regionIndex": 0 },
13+
{ "globalIndex": 9, "regionIndex": 0 },
14+
{ "globalIndex": 10, "regionIndex": 0 },
15+
{ "globalIndex": 11, "regionIndex": 0 },
16+
{ "globalIndex": 12, "regionIndex": 0 },
17+
{ "globalIndex": 13, "regionIndex": 0 },
18+
{ "globalIndex": 14, "regionIndex": 0 },
19+
{ "globalIndex": 15, "regionIndex": 0 },
20+
{ "globalIndex": 16, "regionIndex": 0 },
21+
{ "globalIndex": 17, "regionIndex": 0 },
22+
{ "globalIndex": 18, "regionIndex": 0 },
23+
{ "globalIndex": 19, "regionIndex": 0 },
24+
{ "globalIndex": 20, "regionIndex": 0 },
25+
{ "globalIndex": 21, "regionIndex": 0 },
26+
{ "globalIndex": 22, "regionIndex": 0 },
27+
{ "globalIndex": 23, "regionIndex": 0 },
28+
{ "globalIndex": 24, "regionIndex": 0 },
29+
{ "globalIndex": 25, "regionIndex": 0 },
30+
{ "globalIndex": 26, "regionIndex": 0 },
31+
{ "globalIndex": 27, "regionIndex": 0 },
32+
{ "globalIndex": 28, "regionIndex": 0 },
33+
{ "globalIndex": 29, "regionIndex": 0 },
34+
{ "globalIndex": 30, "regionIndex": 0 },
35+
{ "globalIndex": 31, "regionIndex": 0 },
36+
{ "globalIndex": 32, "regionIndex": 0 },
37+
{ "globalIndex": 33, "regionIndex": 0 },
38+
{ "globalIndex": 34, "regionIndex": 0 },
39+
{ "globalIndex": 35, "regionIndex": 0 },
40+
{ "globalIndex": 36, "regionIndex": 0 },
41+
{ "globalIndex": 37, "regionIndex": 0 },
42+
{ "globalIndex": 38, "regionIndex": 0 },
43+
{ "globalIndex": 39, "regionIndex": 0 },
44+
{ "globalIndex": 40, "regionIndex": 0 },
45+
{ "globalIndex": 41, "regionIndex": 0 },
46+
{ "globalIndex": 42, "regionIndex": 0 },
47+
{ "globalIndex": 43, "regionIndex": 0 },
48+
{ "globalIndex": 44, "regionIndex": 0 },
49+
{ "globalIndex": 45, "regionIndex": 0 },
50+
{ "globalIndex": 46, "regionIndex": 0 },
51+
{ "globalIndex": 47, "regionIndex": 0 },
52+
{ "globalIndex": 48, "regionIndex": 0 },
53+
{ "globalIndex": 49, "regionIndex": 0 },
54+
{ "globalIndex": 50, "regionIndex": 0 },
55+
{ "globalIndex": 51, "regionIndex": 0 },
56+
{ "globalIndex": 52, "regionIndex": 0 },
57+
{ "globalIndex": 53, "regionIndex": 0 },
58+
{ "globalIndex": 54, "regionIndex": 0 },
59+
{ "globalIndex": 55, "regionIndex": 0 },
60+
{ "globalIndex": 56, "regionIndex": 0 },
61+
{ "globalIndex": 57, "regionIndex": 0 },
62+
{ "globalIndex": 58, "regionIndex": 0 },
63+
{ "globalIndex": 59, "regionIndex": 0 },
64+
{ "globalIndex": 60, "regionIndex": 0 },
65+
{ "globalIndex": 61, "regionIndex": 0 },
66+
{ "globalIndex": 62, "regionIndex": 0 },
67+
{ "globalIndex": 63, "regionIndex": 0 },
68+
{ "globalIndex": 64, "regionIndex": 0 },
69+
{ "globalIndex": 65, "regionIndex": 0 },
70+
{ "globalIndex": 66, "regionIndex": 0 },
71+
{ "globalIndex": 67, "regionIndex": 0 },
72+
{ "globalIndex": 68, "regionIndex": 0 },
73+
{ "globalIndex": 69, "regionIndex": 0 },
74+
{ "globalIndex": 70, "regionIndex": 0 },
75+
{ "globalIndex": 71, "regionIndex": 0 },
76+
{ "globalIndex": 72, "regionIndex": 0 },
77+
{ "globalIndex": 73, "regionIndex": 0 },
78+
{ "globalIndex": 74, "regionIndex": 0 },
79+
{ "globalIndex": 75, "regionIndex": 0 },
80+
{ "globalIndex": 76, "regionIndex": 0 },
81+
{ "globalIndex": 77, "regionIndex": 0 },
82+
{ "globalIndex": 78, "regionIndex": 0 },
83+
{ "globalIndex": 79, "regionIndex": 0 },
84+
{ "globalIndex": 80, "regionIndex": 0 },
85+
{ "globalIndex": 81, "regionIndex": 0 },
86+
{ "globalIndex": 82, "regionIndex": 0 },
87+
{ "globalIndex": 83, "regionIndex": 0 },
88+
{ "globalIndex": 84, "regionIndex": 0 },
89+
{ "globalIndex": 85, "regionIndex": 0 },
90+
{ "globalIndex": 86, "regionIndex": 0 },
91+
{ "globalIndex": 87, "regionIndex": 0 },
92+
{ "globalIndex": 88, "regionIndex": 0 },
93+
{ "globalIndex": 89, "regionIndex": 0 },
94+
{ "globalIndex": 90, "regionIndex": 0 },
95+
{ "globalIndex": 91, "regionIndex": 0 },
96+
{ "globalIndex": 92, "regionIndex": 0 },
97+
{ "globalIndex": 93, "regionIndex": 0 },
98+
{ "globalIndex": 94, "regionIndex": 0 },
99+
{ "globalIndex": 95, "regionIndex": 0 },
100+
{ "globalIndex": 96, "regionIndex": 0 },
101+
{ "globalIndex": 97, "regionIndex": 0 },
102+
{ "globalIndex": 98, "regionIndex": 0 },
103+
{ "globalIndex": 99, "regionIndex": 0 },
104+
{ "globalIndex": 100, "regionIndex": 0 },
105+
{ "globalIndex": 101, "regionIndex": 0 },
106+
{ "globalIndex": 102, "regionIndex": 0 },
107+
{ "globalIndex": 103, "regionIndex": 0 },
108+
{ "globalIndex": 104, "regionIndex": 0 },
109+
{ "globalIndex": 105, "regionIndex": 0 },
110+
{ "globalIndex": 106, "regionIndex": 0 },
111+
{ "globalIndex": 107, "regionIndex": 0 },
112+
{ "globalIndex": 108, "regionIndex": 0 },
113+
{ "globalIndex": 109, "regionIndex": 0 },
114+
{ "globalIndex": 110, "regionIndex": 0 },
115+
{ "globalIndex": 111, "regionIndex": 0 },
116+
{ "globalIndex": 112, "regionIndex": 0 },
117+
{ "globalIndex": 113, "regionIndex": 0 },
118+
{ "globalIndex": 114, "regionIndex": 0 },
119+
{ "globalIndex": 115, "regionIndex": 0 },
120+
{ "globalIndex": 116, "regionIndex": 0 },
121+
{ "globalIndex": 117, "regionIndex": 0 },
122+
{ "globalIndex": 118, "regionIndex": 0 },
123+
{ "globalIndex": 119, "regionIndex": 0 },
124+
{ "globalIndex": 120, "regionIndex": 0 },
125+
{ "globalIndex": 121, "regionIndex": 0 },
126+
{ "globalIndex": 122, "regionIndex": 0 },
127+
{ "globalIndex": 123, "regionIndex": 0 },
128+
{ "globalIndex": 124, "regionIndex": 0 },
129+
{ "globalIndex": 125, "regionIndex": 0 },
130+
{ "globalIndex": 126, "regionIndex": 0 },
131+
{ "globalIndex": 127, "regionIndex": 0 },
132+
{ "globalIndex": 128, "regionIndex": 0 },
133+
{ "globalIndex": 129, "regionIndex": 0 },
134+
{ "globalIndex": 130, "regionIndex": 0 },
135+
{ "globalIndex": 131, "regionIndex": 0 },
136+
{ "globalIndex": 132, "regionIndex": 0 },
137+
{ "globalIndex": 133, "regionIndex": 0 },
138+
{ "globalIndex": 134, "regionIndex": 0 },
139+
{ "globalIndex": 135, "regionIndex": 0 },
140+
{ "globalIndex": 136, "regionIndex": 0 },
141+
{ "globalIndex": 137, "regionIndex": 0 },
142+
{ "globalIndex": 138, "regionIndex": 0 },
143+
{ "globalIndex": 139, "regionIndex": 0 },
144+
{ "globalIndex": 140, "regionIndex": 0 },
145+
{ "globalIndex": 141, "regionIndex": 0 },
146+
{ "globalIndex": 142, "regionIndex": 0 },
147+
{ "globalIndex": 143, "regionIndex": 0 },
148+
{ "globalIndex": 144, "regionIndex": 0 },
149+
{ "globalIndex": 145, "regionIndex": 0 },
150+
{ "globalIndex": 146, "regionIndex": 0 },
151+
{ "globalIndex": 147, "regionIndex": 0 },
152+
{ "globalIndex": 148, "regionIndex": 0 },
153+
{ "globalIndex": 149, "regionIndex": 0 },
154+
{ "globalIndex": 150, "regionIndex": 0 },
155+
{ "globalIndex": 151, "regionIndex": 0 },
156+
{ "globalIndex": 152, "regionIndex": 0 },
157+
{ "globalIndex": 153, "regionIndex": 0 },
158+
{ "globalIndex": 154, "regionIndex": 0 },
159+
{ "globalIndex": 155, "regionIndex": 0 },
160+
{ "globalIndex": 156, "regionIndex": 0 },
161+
{ "globalIndex": 157, "regionIndex": 0 },
162+
{ "globalIndex": 158, "regionIndex": 0 },
163+
{ "globalIndex": 159, "regionIndex": 0 },
164+
{ "globalIndex": 160, "regionIndex": 0 },
165+
{ "globalIndex": 161, "regionIndex": 0 },
166+
{ "globalIndex": 162, "regionIndex": 0 },
167+
{ "globalIndex": 163, "regionIndex": 0 },
168+
{ "globalIndex": 164, "regionIndex": 0 },
169+
{ "globalIndex": 165, "regionIndex": 0 },
170+
{ "globalIndex": 166, "regionIndex": 0 },
171+
{ "globalIndex": 167, "regionIndex": 0 },
172+
{ "globalIndex": 168, "regionIndex": 0 },
173+
{ "globalIndex": 169, "regionIndex": 0 },
174+
{ "globalIndex": 170, "regionIndex": 0 },
175+
{ "globalIndex": 171, "regionIndex": 0 },
176+
{ "globalIndex": 172, "regionIndex": 0 },
177+
{ "globalIndex": 173, "regionIndex": 0 },
178+
{ "globalIndex": 174, "regionIndex": 0 },
179+
{ "globalIndex": 175, "regionIndex": 0 },
180+
{ "globalIndex": 176, "regionIndex": 0 },
181+
{ "globalIndex": 177, "regionIndex": 0 },
182+
{ "globalIndex": 178, "regionIndex": 0 },
183+
{ "globalIndex": 179, "regionIndex": 0 },
184+
{ "globalIndex": 180, "regionIndex": 0 },
185+
{ "globalIndex": 181, "regionIndex": 0 },
186+
{ "globalIndex": 182, "regionIndex": 0 },
187+
{ "globalIndex": 183, "regionIndex": 0 },
188+
{ "globalIndex": 184, "regionIndex": 0 },
189+
{ "globalIndex": 185, "regionIndex": 0 },
190+
{ "globalIndex": 186, "regionIndex": 0 },
191+
{ "globalIndex": 187, "regionIndex": 0 },
192+
{ "globalIndex": 188, "regionIndex": 0 },
193+
{ "globalIndex": 189, "regionIndex": 0 },
194+
{ "globalIndex": 190, "regionIndex": 0 },
195+
{ "globalIndex": 191, "regionIndex": 0 },
196+
{ "globalIndex": 192, "regionIndex": 0 },
197+
{ "globalIndex": 193, "regionIndex": 0 },
198+
{ "globalIndex": 194, "regionIndex": 0 },
199+
{ "globalIndex": 195, "regionIndex": 0 },
200+
{ "globalIndex": 196, "regionIndex": 0 },
201+
{ "globalIndex": 197, "regionIndex": 0 },
202+
{ "globalIndex": 198, "regionIndex": 0 },
203+
{ "globalIndex": 199, "regionIndex": 0 }
204+
]
205+
}

examples/test_output/mesh.mp4

17.7 KB
Binary file not shown.

0 commit comments

Comments
 (0)